miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 6372 0.75 0.26058
Target:  5'- gGCCggggGGCCGgGggGCCGGGgggcCGGGGGGCCg -3'
miRNA:   3'- -CGG----UCGGCgCa-CGGCUU----GUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 7796 0.71 0.446764
Target:  5'- cGCUGGCgggaGCcaggGUCGGACAGGAGGCg -3'
miRNA:   3'- -CGGUCGg---CGca--CGGCUUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 9658 0.71 0.437992
Target:  5'- aGCgGGCCGCGcgcggagggcGCgGGAUGGGGGGCUc -3'
miRNA:   3'- -CGgUCGGCGCa---------CGgCUUGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 9845 0.7 0.494805
Target:  5'- gGCCGGCgugcuggggggagGCGUGCUGGaauuccagauugacGguGGAGGCCa -3'
miRNA:   3'- -CGGUCGg------------CGCACGGCU--------------UguCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 11754 0.66 0.763053
Target:  5'- cCCAGgCGCGggGCCGAAaaGGGAaGCUg -3'
miRNA:   3'- cGGUCgGCGCa-CGGCUUg-UCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 12675 0.75 0.285543
Target:  5'- uGCCGGCCaGCGcGCCGAugAucAGGCCc -3'
miRNA:   3'- -CGGUCGG-CGCaCGGCUugUccUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 13678 0.66 0.744466
Target:  5'- aGCagGGCCGcCGUcCCGAcGCcGGAGGUCa -3'
miRNA:   3'- -CGg-UCGGC-GCAcGGCU-UGuCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 15111 0.67 0.676947
Target:  5'- gGCCGGUgGCGcUGUCGucguccuCGGGGGGUUc -3'
miRNA:   3'- -CGGUCGgCGC-ACGGCuu-----GUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 15173 0.66 0.744466
Target:  5'- gGUCcGCCGCGaUGUUcggggGGugGGGGGGCUg -3'
miRNA:   3'- -CGGuCGGCGC-ACGG-----CUugUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 15739 0.66 0.73503
Target:  5'- uGCCauGGCgGUG-GCCGAcACAGGgagGGGCg -3'
miRNA:   3'- -CGG--UCGgCGCaCGGCU-UGUCC---UCCGg -5'
5422 3' -60.2 NC_001798.1 + 15820 0.66 0.73503
Target:  5'- gGCCAugaggcGCCGC---CCGGuuCGGGGGGCCc -3'
miRNA:   3'- -CGGU------CGGCGcacGGCUu-GUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 16448 0.67 0.656236
Target:  5'- cGCC-GCCGCGacacccuccauacUGCCGAAgGaGGAugGGCUg -3'
miRNA:   3'- -CGGuCGGCGC-------------ACGGCUUgU-CCU--CCGG- -5'
5422 3' -60.2 NC_001798.1 + 17987 0.7 0.482795
Target:  5'- --gGGCUGCGcgGCCcgGAACAGGAggauGGCCg -3'
miRNA:   3'- cggUCGGCGCa-CGG--CUUGUCCU----CCGG- -5'
5422 3' -60.2 NC_001798.1 + 19967 0.72 0.401433
Target:  5'- aGCCgAGCCGCGauagccccGCCGGACGcGGAuuccggguucucccGGCCg -3'
miRNA:   3'- -CGG-UCGGCGCa-------CGGCUUGU-CCU--------------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 20480 0.69 0.558624
Target:  5'- cGCCGGUgCGCGUGCgCGAuccccggaagACuGGccgGGGCCu -3'
miRNA:   3'- -CGGUCG-GCGCACG-GCU----------UGuCC---UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 21723 0.66 0.732183
Target:  5'- cGCgCAGCCgGUGUGCCccuggugcggcggcGAcCGGGAcGCCg -3'
miRNA:   3'- -CG-GUCGG-CGCACGG--------------CUuGUCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 22128 0.7 0.510712
Target:  5'- cGCCGGCCccuuuggggccgGCGgggGCC-AACGGGAgcgcggGGCCg -3'
miRNA:   3'- -CGGUCGG------------CGCa--CGGcUUGUCCU------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 22749 0.66 0.719762
Target:  5'- gGCCgaGGUCGCGaUGgCGGACgAGGAcgggggacgucuccgGGCCg -3'
miRNA:   3'- -CGG--UCGGCGC-ACgGCUUG-UCCU---------------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 22938 0.73 0.330785
Target:  5'- cGCC-GCCGCcgaugccGUGCCGAcgagGCggccccggcguccgGGGAGGCCg -3'
miRNA:   3'- -CGGuCGGCG-------CACGGCU----UG--------------UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 22996 0.68 0.65129
Target:  5'- aGCCuGCCGCGgacggcgucgucucGCCGcGGCAGcuGGCCc -3'
miRNA:   3'- -CGGuCGGCGCa-------------CGGC-UUGUCcuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.