miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 1218 0.7 0.498528
Target:  5'- cGCgCGGcCCGCG-GCCGAcgcccagcguaucuGCGGGggcGGGCCc -3'
miRNA:   3'- -CG-GUC-GGCGCaCGGCU--------------UGUCC---UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 1722 0.67 0.684802
Target:  5'- gGCCAGCaCG-GUGCgGcGCAGGucccgcgccgccGGCCa -3'
miRNA:   3'- -CGGUCG-GCgCACGgCuUGUCCu-----------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 2070 0.71 0.437992
Target:  5'- aGCCcGCCGCGcucGgCGGACcacuccggGGGGGGCCc -3'
miRNA:   3'- -CGGuCGGCGCa--CgGCUUG--------UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 2204 0.67 0.661177
Target:  5'- gGCC-GCCGCGcGgCGcAGCGGGcccgaggcgcgcagcGGGCCg -3'
miRNA:   3'- -CGGuCGGCGCaCgGC-UUGUCC---------------UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 2300 0.76 0.231911
Target:  5'- gGCCAGCgCGCGcggGUCGAACAuGAgGGCCg -3'
miRNA:   3'- -CGGUCG-GCGCa--CGGCUUGUcCU-CCGG- -5'
5422 3' -60.2 NC_001798.1 + 2334 0.66 0.75381
Target:  5'- cGCCAcGgCGCGggGaaGAGCGGGuGGUCc -3'
miRNA:   3'- -CGGU-CgGCGCa-CggCUUGUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 2454 0.72 0.387524
Target:  5'- cGCCAGCCGCccUGCgGGuCGGGgcccucggcGGGCCg -3'
miRNA:   3'- -CGGUCGGCGc-ACGgCUuGUCC---------UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 2513 0.75 0.284251
Target:  5'- cGgCGGCCGCGgcggcggcgucgGCgGGGCGGGGGGCg -3'
miRNA:   3'- -CgGUCGGCGCa-----------CGgCUUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 2552 0.68 0.617611
Target:  5'- gGCCc-CCGCGggaggggcgGCCGcggGGCGGGGGGCg -3'
miRNA:   3'- -CGGucGGCGCa--------CGGC---UUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 2701 0.77 0.195811
Target:  5'- aGUCGGCCGCGgcgacggUGUCGGccaGCAGGGGGCg -3'
miRNA:   3'- -CGGUCGGCGC-------ACGGCU---UGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 2990 0.74 0.298717
Target:  5'- gGCCGGcCCGCGggccCCGGGCGcGGGGGCg -3'
miRNA:   3'- -CGGUC-GGCGCac--GGCUUGU-CCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 3037 0.7 0.510712
Target:  5'- gGCCAGCCcCGgcacgGCCGc-CAGGucGCCg -3'
miRNA:   3'- -CGGUCGGcGCa----CGGCuuGUCCucCGG- -5'
5422 3' -60.2 NC_001798.1 + 3192 0.68 0.627517
Target:  5'- cGUCGGCCcCG-GCCG-GCGcGGAGGCg -3'
miRNA:   3'- -CGGUCGGcGCaCGGCuUGU-CCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 3427 0.66 0.734082
Target:  5'- cGCCAGCaggggcgcguaggCGCGgcgcagGCUGGucaGCAGGAaGCCc -3'
miRNA:   3'- -CGGUCG-------------GCGCa-----CGGCU---UGUCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 3879 0.74 0.326462
Target:  5'- -aCAGCaCGCGccCCGGggGCGGGGGGCCg -3'
miRNA:   3'- cgGUCG-GCGCacGGCU--UGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 4080 0.66 0.75381
Target:  5'- gGUC-GCCGCGgggguccggGCCgGGGCGGGcucGGCCc -3'
miRNA:   3'- -CGGuCGGCGCa--------CGG-CUUGUCCu--CCGG- -5'
5422 3' -60.2 NC_001798.1 + 4343 0.7 0.520168
Target:  5'- aGUCAGagGCG-GCCGAgcgccgGCGGGGGGCg -3'
miRNA:   3'- -CGGUCggCGCaCGGCU------UGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 5896 0.69 0.558624
Target:  5'- cGCgGGCUccgccccgagGCGgGcCCGGACGGGGGGCg -3'
miRNA:   3'- -CGgUCGG----------CGCaC-GGCUUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 5991 0.68 0.647331
Target:  5'- aCCGGCUGCGcgGCgGAGacCGGGAcGGCa -3'
miRNA:   3'- cGGUCGGCGCa-CGgCUU--GUCCU-CCGg -5'
5422 3' -60.2 NC_001798.1 + 6232 0.72 0.412281
Target:  5'- gGCCGGCCGgGgggaCGGGCGGGggacggggggacGGGCCg -3'
miRNA:   3'- -CGGUCGGCgCacg-GCUUGUCC------------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.