miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 153440 0.67 0.706254
Target:  5'- gGCCAGgCGCGcgGCCGucucccAGGCCa -3'
miRNA:   3'- -CGGUCgGCGCa-CGGCuuguccUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 152504 0.66 0.763053
Target:  5'- -aUAGCCGCGcGCCccgGCGGG-GGCg -3'
miRNA:   3'- cgGUCGGCGCaCGGcu-UGUCCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 152227 0.68 0.617611
Target:  5'- gGUCuGCCGCGgcgGCCGcuCGGGgccgGGGUCc -3'
miRNA:   3'- -CGGuCGGCGCa--CGGCuuGUCC----UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 152161 0.7 0.529692
Target:  5'- -gCAGCCGgGUGguCCGGggaaaAgGGGGGGCCu -3'
miRNA:   3'- cgGUCGGCgCAC--GGCU-----UgUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 151606 0.76 0.243047
Target:  5'- cGCuCGGCCGgGgGCCGGGCcGGGGGCg -3'
miRNA:   3'- -CG-GUCGGCgCaCGGCUUGuCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 151137 0.66 0.75288
Target:  5'- gGCCAggucaucguccucGUCGUccGUGCCGGGCcacgGGGGGGUg -3'
miRNA:   3'- -CGGU-------------CGGCG--CACGGCUUG----UCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 150851 0.67 0.657224
Target:  5'- cGCCGGUCGgGUcGCggCGGGCuGGGAGGUUc -3'
miRNA:   3'- -CGGUCGGCgCA-CG--GCUUG-UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 150701 0.69 0.587983
Target:  5'- cGCCuGCgCGCGccccccGCCGGccGCAGGgggaagagAGGCCa -3'
miRNA:   3'- -CGGuCG-GCGCa-----CGGCU--UGUCC--------UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 150625 0.71 0.473652
Target:  5'- gGCUccugGGCCGCGcgggGCUGucucGCGGGGGGCg -3'
miRNA:   3'- -CGG----UCGGCGCa---CGGCu---UGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 150390 0.68 0.597838
Target:  5'- cCCGGCCGCGU-CCGcgcucgcaGACAccacGGGGGCg -3'
miRNA:   3'- cGGUCGGCGCAcGGC--------UUGU----CCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 149740 0.67 0.667099
Target:  5'- gGCgCAGCagCGCGgggGCCGA--GGGAGGUUu -3'
miRNA:   3'- -CG-GUCG--GCGCa--CGGCUugUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 149665 0.7 0.482795
Target:  5'- cGCCgGGUCGCGggccCCGGGCucGGGGCCg -3'
miRNA:   3'- -CGG-UCGGCGCac--GGCUUGucCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 149430 0.66 0.75381
Target:  5'- cGCaguuGCgCGCGUGCUcgggGAGCAGGGugcGGCg -3'
miRNA:   3'- -CGgu--CG-GCGCACGG----CUUGUCCU---CCGg -5'
5422 3' -60.2 NC_001798.1 + 147464 0.72 0.395667
Target:  5'- cGCCGcGCCGCGUgaGCCGuccGCcGGGGGaCCc -3'
miRNA:   3'- -CGGU-CGGCGCA--CGGCu--UGuCCUCC-GG- -5'
5422 3' -60.2 NC_001798.1 + 147212 0.69 0.587983
Target:  5'- uCCGGCC-CGggcccccgGCgGAGCGcGGGGGCCc -3'
miRNA:   3'- cGGUCGGcGCa-------CGgCUUGU-CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 147167 0.66 0.744466
Target:  5'- gGgUAGCCGCccggcGCCGGGCGGaAGGCg -3'
miRNA:   3'- -CgGUCGGCGca---CGGCUUGUCcUCCGg -5'
5422 3' -60.2 NC_001798.1 + 146566 0.69 0.578158
Target:  5'- gGCCagcagacgGGCCGCGgGCC-AGCAGacGGGCCg -3'
miRNA:   3'- -CGG--------UCGGCGCaCGGcUUGUCc-UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 146453 0.74 0.291414
Target:  5'- aGCCcgcGGCCGCa-GCCGAGCAGcgccgcgggcuccGGGGCCg -3'
miRNA:   3'- -CGG---UCGGCGcaCGGCUUGUC-------------CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 146280 0.71 0.454743
Target:  5'- -gCAGCCGgagagGCCGAGCGGGGagugggcGGCCg -3'
miRNA:   3'- cgGUCGGCgca--CGGCUUGUCCU-------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 144060 0.66 0.73503
Target:  5'- cGCCAgGCCGUGcGCCuGGcCGGGAuGGUg -3'
miRNA:   3'- -CGGU-CGGCGCaCGG-CUuGUCCU-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.