miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 97450 0.81 0.108167
Target:  5'- cGCUGcGCCGCGUGCUGGcgcgGCuGGGGGCCg -3'
miRNA:   3'- -CGGU-CGGCGCACGGCU----UGuCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 135774 0.81 0.11095
Target:  5'- gGCCGGCCGcCGgcccGCCGG--AGGAGGCCg -3'
miRNA:   3'- -CGGUCGGC-GCa---CGGCUugUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 26004 0.8 0.129102
Target:  5'- uCCGGCCGCGUGuUCGGGCcGGGGGUCu -3'
miRNA:   3'- cGGUCGGCGCAC-GGCUUGuCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 26488 0.79 0.14269
Target:  5'- cGUCGGCCGCGgGCCGcGCGGGGacggugcuGGCCg -3'
miRNA:   3'- -CGGUCGGCGCaCGGCuUGUCCU--------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 51472 0.78 0.187021
Target:  5'- cGCgGGCCGCGUGUCGGgcccggagcuGCAGGcGGCa -3'
miRNA:   3'- -CGgUCGGCGCACGGCU----------UGUCCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 2701 0.77 0.195811
Target:  5'- aGUCGGCCGCGgcgacggUGUCGGccaGCAGGGGGCg -3'
miRNA:   3'- -CGGUCGGCGC-------ACGGCU---UGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 36493 0.77 0.196284
Target:  5'- cGCCGGCgcgaCGCGggcgGCCGGGCGGGGgcgcgcggcGGCCg -3'
miRNA:   3'- -CGGUCG----GCGCa---CGGCUUGUCCU---------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 44977 0.77 0.21093
Target:  5'- cGCCcucggaggcggAGCCGCG-GCU--GCAGGAGGCCc -3'
miRNA:   3'- -CGG-----------UCGGCGCaCGGcuUGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 97008 0.76 0.21964
Target:  5'- gGCCcGCCGCccGCCGAuagcucuucuguccGCgAGGAGGCCg -3'
miRNA:   3'- -CGGuCGGCGcaCGGCU--------------UG-UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 134966 0.76 0.221209
Target:  5'- gGCCAcccauGCCGCGUGCCu----GGGGGCCu -3'
miRNA:   3'- -CGGU-----CGGCGCACGGcuuguCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 134375 0.76 0.226506
Target:  5'- cGCCGGCCGCuccucgcGCCGcccuccugGACGuGGAGGCCa -3'
miRNA:   3'- -CGGUCGGCGca-----CGGC--------UUGU-CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 38186 0.76 0.231911
Target:  5'- --gGGCCGCuG-GUCGAGCAGGAGGCg -3'
miRNA:   3'- cggUCGGCG-CaCGGCUUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 2300 0.76 0.231911
Target:  5'- gGCCAGCgCGCGcggGUCGAACAuGAgGGCCg -3'
miRNA:   3'- -CGGUCG-GCGCa--CGGCUUGUcCU-CCGG- -5'
5422 3' -60.2 NC_001798.1 + 151606 0.76 0.243047
Target:  5'- cGCuCGGCCGgGgGCCGGGCcGGGGGCg -3'
miRNA:   3'- -CG-GUCGGCgCaCGGCUUGuCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 6372 0.75 0.26058
Target:  5'- gGCCggggGGCCGgGggGCCGGGgggcCGGGGGGCCg -3'
miRNA:   3'- -CGG----UCGGCgCa-CGGCUU----GUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 135037 0.75 0.26058
Target:  5'- gGCCGGCCGUG-GCCucGgAGGcGGCCg -3'
miRNA:   3'- -CGGUCGGCGCaCGGcuUgUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 46122 0.75 0.27913
Target:  5'- gGCCAG-CGCGUagGCaUGAcCAGGAGGCCc -3'
miRNA:   3'- -CGGUCgGCGCA--CG-GCUuGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 2513 0.75 0.284251
Target:  5'- cGgCGGCCGCGgcggcggcgucgGCgGGGCGGGGGGCg -3'
miRNA:   3'- -CgGUCGGCGCa-----------CGgCUUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 12675 0.75 0.285543
Target:  5'- uGCCGGCCaGCGcGCCGAugAucAGGCCc -3'
miRNA:   3'- -CGGUCGG-CGCaCGGCUugUccUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 146453 0.74 0.291414
Target:  5'- aGCCcgcGGCCGCa-GCCGAGCAGcgccgcgggcuccGGGGCCg -3'
miRNA:   3'- -CGG---UCGGCGcaCGGCUUGUC-------------CUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.