miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 52141 0.74 0.292072
Target:  5'- cCCGGCgccgucaaaUGCGUGCUcccGCGGGAGGCCg -3'
miRNA:   3'- cGGUCG---------GCGCACGGcu-UGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 35401 0.74 0.292072
Target:  5'- gGCCGGCCGCcggaUGCCc-GCGGG-GGCCu -3'
miRNA:   3'- -CGGUCGGCGc---ACGGcuUGUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 2990 0.74 0.298717
Target:  5'- gGCCGGcCCGCGggccCCGGGCGcGGGGGCg -3'
miRNA:   3'- -CGGUC-GGCGCac--GGCUUGU-CCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 24586 0.74 0.305478
Target:  5'- gGCgGGCCGCGUgGCCGu---GGAGuGCCu -3'
miRNA:   3'- -CGgUCGGCGCA-CGGCuuguCCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 99823 0.74 0.305478
Target:  5'- gGCCAGCCGCaGUacuaccugGCC--ACGGGGGGCUu -3'
miRNA:   3'- -CGGUCGGCG-CA--------CGGcuUGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 51936 0.74 0.312356
Target:  5'- gGCC-GCCGcCGUGCCGcugcucagcGCGGGAggGGCCg -3'
miRNA:   3'- -CGGuCGGC-GCACGGCu--------UGUCCU--CCGG- -5'
5422 3' -60.2 NC_001798.1 + 88107 0.74 0.316538
Target:  5'- gGCCAGCCGCGcGaCCGucuccucuaccucGCGGGucuGGGCCa -3'
miRNA:   3'- -CGGUCGGCGCaC-GGCu------------UGUCC---UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 130526 0.74 0.31935
Target:  5'- uGCCGGUgGCGgcgaugGCCccGAGguGGGGGCCc -3'
miRNA:   3'- -CGGUCGgCGCa-----CGG--CUUguCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 139047 0.74 0.31935
Target:  5'- aCCAGCCGC-UGC--GGCuGGAGGCCg -3'
miRNA:   3'- cGGUCGGCGcACGgcUUGuCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 43067 0.74 0.31935
Target:  5'- cGCCGGCCgaGCGcGCCGGGCucGGGcGCCg -3'
miRNA:   3'- -CGGUCGG--CGCaCGGCUUGucCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 3879 0.74 0.326462
Target:  5'- -aCAGCaCGCGccCCGGggGCGGGGGGCCg -3'
miRNA:   3'- cgGUCG-GCGCacGGCU--UGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 24818 0.74 0.326462
Target:  5'- cGCCuGCgcggggaccugCGCGUGgCCGGcgGCAGcGAGGCCg -3'
miRNA:   3'- -CGGuCG-----------GCGCAC-GGCU--UGUC-CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 22938 0.73 0.330785
Target:  5'- cGCC-GCCGCcgaugccGUGCCGAcgagGCggccccggcguccgGGGAGGCCg -3'
miRNA:   3'- -CGGuCGGCG-------CACGGCU----UG--------------UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 30923 0.73 0.33369
Target:  5'- gGCCgacggugagGGCgGCGgggGUCGGGCGGGGGGCg -3'
miRNA:   3'- -CGG---------UCGgCGCa--CGGCUUGUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 54706 0.73 0.336614
Target:  5'- cGCCGGggucuacgaCGCGgugcggaccuggggGCCGGACGcGGAGGCCg -3'
miRNA:   3'- -CGGUCg--------GCGCa-------------CGGCUUGU-CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 25593 0.73 0.341035
Target:  5'- cCUGGCCGCGgGCCGcGCcGGGGGCg -3'
miRNA:   3'- cGGUCGGCGCaCGGCuUGuCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 78572 0.73 0.348497
Target:  5'- cGCUGGCCGCGcgcgagcGCCGGGCccAGaucGAGGCCg -3'
miRNA:   3'- -CGGUCGGCGCa------CGGCUUG--UC---CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 97703 0.73 0.356074
Target:  5'- gGCCAGCCucgggcgcuGCGUGCgCGAGCAgcgcGGGGaGCUc -3'
miRNA:   3'- -CGGUCGG---------CGCACG-GCUUGU----CCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 36845 0.73 0.356074
Target:  5'- aCCGGCUGUGUGgUGggUggGGGAGGCa -3'
miRNA:   3'- cGGUCGGCGCACgGCuuG--UCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 49628 0.73 0.362991
Target:  5'- aGCCgcgagauccuaugGGCCGCGUacGCCGAGCAGauGAugcGGCCc -3'
miRNA:   3'- -CGG-------------UCGGCGCA--CGGCUUGUC--CU---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.