miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 39561 0.77 0.385433
Target:  5'- cGGGGCCgUCCGUCCGcgccGAcGCGgggUGGCGa -3'
miRNA:   3'- -CCCCGG-AGGCAGGU----UUuUGCa--GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 121798 0.75 0.492765
Target:  5'- cGGGGCCgggCCGgCCGu---UGUCGGCAc -3'
miRNA:   3'- -CCCCGGa--GGCaGGUuuuuGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 22498 0.74 0.521736
Target:  5'- cGGGGCgaUCGUCCAcacGGAGCG-CGGCu -3'
miRNA:   3'- -CCCCGgaGGCAGGU---UUUUGCaGCCGu -5'
5422 5' -55.4 NC_001798.1 + 80249 0.74 0.571365
Target:  5'- cGGGGCCUCCuGUUCGGc-ACG-CGGCu -3'
miRNA:   3'- -CCCCGGAGG-CAGGUUuuUGCaGCCGu -5'
5422 5' -55.4 NC_001798.1 + 19829 0.72 0.668853
Target:  5'- uGGGGCUUCCGUugcgcgacacgcgcCCGgggcggguaggccAGAGCGuUCGGCGg -3'
miRNA:   3'- -CCCCGGAGGCA--------------GGU-------------UUUUGC-AGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 72597 0.71 0.70309
Target:  5'- cGGGGCUgcggUCCGUCguCAccGAGACGaCGGCGc -3'
miRNA:   3'- -CCCCGG----AGGCAG--GU--UUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 81778 0.71 0.713045
Target:  5'- cGGGCCUCCGccccccCCGAGggguGGCGUccgcCGGCAc -3'
miRNA:   3'- cCCCGGAGGCa-----GGUUU----UUGCA----GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 83838 0.71 0.713045
Target:  5'- cGGGCCgguccCCGUCCGGGcGGCGcUGGCGg -3'
miRNA:   3'- cCCCGGa----GGCAGGUUU-UUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 29398 0.71 0.722932
Target:  5'- aGGGCCgcgCCGgcggggcgCCGGGGggacucccaucuGCGUCGGCGg -3'
miRNA:   3'- cCCCGGa--GGCa-------GGUUUU------------UGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 56069 0.71 0.732741
Target:  5'- cGGGGCgCUCUcuUCCGGAGGCGUuuggagcccacgCGGCGu -3'
miRNA:   3'- -CCCCG-GAGGc-AGGUUUUUGCA------------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 34990 0.7 0.742464
Target:  5'- gGGGGCCccUCCGgCCGGGGcgcACcUCGGCGg -3'
miRNA:   3'- -CCCCGG--AGGCaGGUUUU---UGcAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 109077 0.7 0.752092
Target:  5'- gGGGGCC-CCGacgcccgCCGAcAACGgcUCGGCGc -3'
miRNA:   3'- -CCCCGGaGGCa------GGUUuUUGC--AGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 2395 0.7 0.761614
Target:  5'- -aGGCCUCCaGggcggcggCCGAGGGCGcCGGCGu -3'
miRNA:   3'- ccCCGGAGG-Ca-------GGUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 129519 0.7 0.761614
Target:  5'- uGGGCCUCgCGUUCuccGGGGCG-CGGCc -3'
miRNA:   3'- cCCCGGAG-GCAGGu--UUUUGCaGCCGu -5'
5422 5' -55.4 NC_001798.1 + 39475 0.7 0.780309
Target:  5'- gGGGGCCUggcgcgugccUCGUggccgcgggcccCCGGAGACGUCGaGCu -3'
miRNA:   3'- -CCCCGGA----------GGCA------------GGUUUUUGCAGC-CGu -5'
5422 5' -55.4 NC_001798.1 + 122424 0.7 0.780309
Target:  5'- cGGaGGCCUgugCCG-CCGAGcGCGUCGuGCGc -3'
miRNA:   3'- -CC-CCGGA---GGCaGGUUUuUGCAGC-CGU- -5'
5422 5' -55.4 NC_001798.1 + 97638 0.7 0.789464
Target:  5'- cGGGCCgccgcggaCGUgCGGGAGCGcCGGCGg -3'
miRNA:   3'- cCCCGGag------GCAgGUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 60000 0.7 0.789464
Target:  5'- uGGGGCCgguggCgGUgacacacacgCUggGGACGUCGGCc -3'
miRNA:   3'- -CCCCGGa----GgCA----------GGuuUUUGCAGCCGu -5'
5422 5' -55.4 NC_001798.1 + 68114 0.7 0.789464
Target:  5'- cGGGGCCgcgCaCGgCCAAGAcgGCGagGGCGg -3'
miRNA:   3'- -CCCCGGa--G-GCaGGUUUU--UGCagCCGU- -5'
5422 5' -55.4 NC_001798.1 + 152247 0.69 0.798478
Target:  5'- cGGGGCCggggUCCGcCCGGGAGC-UCGuGCc -3'
miRNA:   3'- -CCCCGG----AGGCaGGUUUUUGcAGC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.