miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 1257 0.68 0.87195
Target:  5'- cGGGCC-CgCGUCCGcgu-CGUCGcGCAg -3'
miRNA:   3'- cCCCGGaG-GCAGGUuuuuGCAGC-CGU- -5'
5422 5' -55.4 NC_001798.1 + 1514 0.68 0.840338
Target:  5'- cGGcGGCCcggCCGUCCAgcgccggGAGcACGgcgCGGCGg -3'
miRNA:   3'- -CC-CCGGa--GGCAGGU-------UUU-UGCa--GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 2395 0.7 0.761614
Target:  5'- -aGGCCUCCaGggcggcggCCGAGGGCGcCGGCGu -3'
miRNA:   3'- ccCCGGAGG-Ca-------GGUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 2506 0.67 0.899353
Target:  5'- cGGGGCgCggcggCCGcggCGGcgGCGUCGGCGg -3'
miRNA:   3'- -CCCCG-Ga----GGCag-GUUuuUGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 3000 0.68 0.864555
Target:  5'- cGGGCC-CCGggCgCGGGGGCG-CGGCGg -3'
miRNA:   3'- cCCCGGaGGCa-G-GUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 3997 0.68 0.849148
Target:  5'- cGGGGCCgcCCGgCCGuGAAGCGgcccgUGGCGu -3'
miRNA:   3'- -CCCCGGa-GGCaGGU-UUUUGCa----GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 4736 0.67 0.899353
Target:  5'- -cGGCCUCCccggacgCCGGGGccgccuCGUCGGCAu -3'
miRNA:   3'- ccCCGGAGGca-----GGUUUUu-----GCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 4850 0.68 0.856952
Target:  5'- cGGGGCgaCgGUCCGGGuuCGgggugggCGGCGg -3'
miRNA:   3'- -CCCCGgaGgCAGGUUUuuGCa------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 6037 0.67 0.886097
Target:  5'- gGGGGCCacagCGagaCAGAGACGcCGGCGg -3'
miRNA:   3'- -CCCCGGag--GCag-GUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 8222 0.66 0.933547
Target:  5'- uGGGuCCUUCGUCUGGAGccCGUaccCGGCAg -3'
miRNA:   3'- cCCC-GGAGGCAGGUUUUu-GCA---GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 13410 0.69 0.807343
Target:  5'- gGGGGCCUCCGauggggcaUgUAGGAGCacgcugCGGCAg -3'
miRNA:   3'- -CCCCGGAGGC--------AgGUUUUUGca----GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 13681 0.68 0.87195
Target:  5'- aGGGCCgCCGUCCc--GACGcCGGa- -3'
miRNA:   3'- cCCCGGaGGCAGGuuuUUGCaGCCgu -5'
5422 5' -55.4 NC_001798.1 + 15764 0.66 0.928438
Target:  5'- aGGGGCgUCUucUCCGGAgcgGACGUaGGCGa -3'
miRNA:   3'- -CCCCGgAGGc-AGGUUU---UUGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 19829 0.72 0.668853
Target:  5'- uGGGGCUUCCGUugcgcgacacgcgcCCGgggcggguaggccAGAGCGuUCGGCGg -3'
miRNA:   3'- -CCCCGGAGGCA--------------GGU-------------UUUUGC-AGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 22498 0.74 0.521736
Target:  5'- cGGGGCgaUCGUCCAcacGGAGCG-CGGCu -3'
miRNA:   3'- -CCCCGgaGGCAGGU---UUUUGCaGCCGu -5'
5422 5' -55.4 NC_001798.1 + 29398 0.71 0.722932
Target:  5'- aGGGCCgcgCCGgcggggcgCCGGGGggacucccaucuGCGUCGGCGg -3'
miRNA:   3'- cCCCGGa--GGCa-------GGUUUU------------UGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 33338 0.66 0.943056
Target:  5'- gGGGGCCcgaUCGUgCAGAGcacgcACGUCuGGCc -3'
miRNA:   3'- -CCCCGGa--GGCAgGUUUU-----UGCAG-CCGu -5'
5422 5' -55.4 NC_001798.1 + 34990 0.7 0.742464
Target:  5'- gGGGGCCccUCCGgCCGGGGcgcACcUCGGCGg -3'
miRNA:   3'- -CCCCGG--AGGCaGGUUUU---UGcAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 35422 0.68 0.864555
Target:  5'- gGGGGCCUaaugCGgCgGGAGGCGUgGGCc -3'
miRNA:   3'- -CCCCGGAg---GCaGgUUUUUGCAgCCGu -5'
5422 5' -55.4 NC_001798.1 + 36797 0.68 0.844371
Target:  5'- cGGGGaCCUCgGUUgGGcgacgucugcggucuAGugGUCGGCGu -3'
miRNA:   3'- -CCCC-GGAGgCAGgUU---------------UUugCAGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.