miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 38964 0.68 0.877
Target:  5'- cGGcGGCCgCCGuUCCGAugauaggguccuggGGGCGgagCGGCAg -3'
miRNA:   3'- -CC-CCGGaGGC-AGGUU--------------UUUGCa--GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 39475 0.7 0.780309
Target:  5'- gGGGGCCUggcgcgugccUCGUggccgcgggcccCCGGAGACGUCGaGCu -3'
miRNA:   3'- -CCCCGGA----------GGCA------------GGUUUUUGCAGC-CGu -5'
5422 5' -55.4 NC_001798.1 + 39561 0.77 0.385433
Target:  5'- cGGGGCCgUCCGUCCGcgccGAcGCGgggUGGCGa -3'
miRNA:   3'- -CCCCGG-AGGCAGGU----UUuUGCa--GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 43035 0.66 0.923093
Target:  5'- cGGGGCC-CCGggCGcAAAUG-CGGCGc -3'
miRNA:   3'- -CCCCGGaGGCagGUuUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 44373 0.66 0.943056
Target:  5'- --cGCCUCCaaGUCCAGAguugcuguGACGUgGGCc -3'
miRNA:   3'- cccCGGAGG--CAGGUUU--------UUGCAgCCGu -5'
5422 5' -55.4 NC_001798.1 + 46540 0.66 0.915789
Target:  5'- gGGuGGCCcggaUGUCCAGAAACGUCacgucgacccggagGGCc -3'
miRNA:   3'- -CC-CCGGag--GCAGGUUUUUGCAG--------------CCGu -5'
5422 5' -55.4 NC_001798.1 + 47863 0.68 0.856952
Target:  5'- gGGGGCC-CCGU----GGGCGcCGGCGg -3'
miRNA:   3'- -CCCCGGaGGCAgguuUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 50908 0.68 0.841149
Target:  5'- cGGGCCUCCGgCCAcc-AUGUCcgugcgcgGGCAu -3'
miRNA:   3'- cCCCGGAGGCaGGUuuuUGCAG--------CCGU- -5'
5422 5' -55.4 NC_001798.1 + 53627 0.67 0.905639
Target:  5'- cGGGGCCgCCGcggCCAAGuACGccgccgCGGUg -3'
miRNA:   3'- -CCCCGGaGGCa--GGUUUuUGCa-----GCCGu -5'
5422 5' -55.4 NC_001798.1 + 54152 0.67 0.898712
Target:  5'- uGGGCCUCCGacagCCuGAAcaacgaguaccuuACGgCGGCGg -3'
miRNA:   3'- cCCCGGAGGCa---GGuUUU-------------UGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 56069 0.71 0.732741
Target:  5'- cGGGGCgCUCUcuUCCGGAGGCGUuuggagcccacgCGGCGu -3'
miRNA:   3'- -CCCCG-GAGGc-AGGUUUUUGCA------------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 59753 0.66 0.93051
Target:  5'- gGGGuGCCUCCGcuugguucccggcggUuCCGGGAACGcgggCGGUAc -3'
miRNA:   3'- -CCC-CGGAGGC---------------A-GGUUUUUGCa---GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 60000 0.7 0.789464
Target:  5'- uGGGGCCgguggCgGUgacacacacgCUggGGACGUCGGCc -3'
miRNA:   3'- -CCCCGGa----GgCA----------GGuuUUUGCAGCCGu -5'
5422 5' -55.4 NC_001798.1 + 60829 0.69 0.807343
Target:  5'- gGGcGGCCagucuUCCGUCCGcucGCG-CGGCGa -3'
miRNA:   3'- -CC-CCGG-----AGGCAGGUuuuUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 64107 0.67 0.886097
Target:  5'- cGGGGCCgccCCGgcccCCGAc-GCGUgGGUAu -3'
miRNA:   3'- -CCCCGGa--GGCa---GGUUuuUGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 68114 0.7 0.789464
Target:  5'- cGGGGCCgcgCaCGgCCAAGAcgGCGagGGCGg -3'
miRNA:   3'- -CCCCGGa--G-GCaGGUUUU--UGCagCCGU- -5'
5422 5' -55.4 NC_001798.1 + 69453 0.66 0.941229
Target:  5'- gGGGGCC-CUGUCCcccAAAAGCaccgggccgucgCGGCGa -3'
miRNA:   3'- -CCCCGGaGGCAGG---UUUUUGca----------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 72597 0.71 0.70309
Target:  5'- cGGGGCUgcggUCCGUCguCAccGAGACGaCGGCGc -3'
miRNA:   3'- -CCCCGG----AGGCAG--GU--UUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 73248 0.68 0.870488
Target:  5'- gGGGGCCcCCGgggaccuggaggCCcAAGAUGcCGGCGg -3'
miRNA:   3'- -CCCCGGaGGCa-----------GGuUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 76931 0.68 0.87195
Target:  5'- cGGGGCCcCCccCCGGAAgucACGgCGGCGc -3'
miRNA:   3'- -CCCCGGaGGcaGGUUUU---UGCaGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.