miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 95696 0.66 0.933547
Target:  5'- gGGGGCggCCGgcgucgcCCGAAAGCGggcguuucaCGGCGa -3'
miRNA:   3'- -CCCCGgaGGCa------GGUUUUUGCa--------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 143298 0.66 0.933547
Target:  5'- aGGGGCCgUCCGcCCcc-GGCGggucgcCGGCc -3'
miRNA:   3'- -CCCCGG-AGGCaGGuuuUUGCa-----GCCGu -5'
5422 5' -55.4 NC_001798.1 + 8222 0.66 0.933547
Target:  5'- uGGGuCCUUCGUCUGGAGccCGUaccCGGCAg -3'
miRNA:   3'- cCCC-GGAGGCAGGUUUUu-GCA---GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 54152 0.67 0.898712
Target:  5'- uGGGCCUCCGacagCCuGAAcaacgaguaccuuACGgCGGCGg -3'
miRNA:   3'- cCCCGGAGGCa---GGuUUU-------------UGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 102355 0.67 0.890839
Target:  5'- -uGGUCUCCGgcggccgCCGGAAGCccacccgccuggcgGUCGGCGg -3'
miRNA:   3'- ccCCGGAGGCa------GGUUUUUG--------------CAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 146488 0.67 0.88882
Target:  5'- cGGGGCCgggCCGggCCGGcAACGccccgcgccggccgCGGCGg -3'
miRNA:   3'- -CCCCGGa--GGCa-GGUUuUUGCa-------------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 109738 0.67 0.88882
Target:  5'- cGGGGCCUCCucauaaCCAcGgcccuguguacguccGACGUCGcGCGg -3'
miRNA:   3'- -CCCCGGAGGca----GGUuU---------------UUGCAGC-CGU- -5'
5422 5' -55.4 NC_001798.1 + 64107 0.67 0.886097
Target:  5'- cGGGGCCgccCCGgcccCCGAc-GCGUgGGUAu -3'
miRNA:   3'- -CCCCGGa--GGCa---GGUUuuUGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 6037 0.67 0.886097
Target:  5'- gGGGGCCacagCGagaCAGAGACGcCGGCGg -3'
miRNA:   3'- -CCCCGGag--GCag-GUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 4736 0.67 0.899353
Target:  5'- -cGGCCUCCccggacgCCGGGGccgccuCGUCGGCAu -3'
miRNA:   3'- ccCCGGAGGca-----GGUUUUu-----GCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 144999 0.67 0.899353
Target:  5'- cGGGGCCUCguagCG-CCAAGAAacauCGUCcGCGg -3'
miRNA:   3'- -CCCCGGAG----GCaGGUUUUU----GCAGcCGU- -5'
5422 5' -55.4 NC_001798.1 + 109271 0.67 0.911692
Target:  5'- cGGGGUUUgCGUUCGucAACG-CGGCc -3'
miRNA:   3'- -CCCCGGAgGCAGGUuuUUGCaGCCGu -5'
5422 5' -55.4 NC_001798.1 + 103710 0.67 0.911692
Target:  5'- cGGGGCCcgCCGuuguugcgugUCCGccGACGUCcgGGCc -3'
miRNA:   3'- -CCCCGGa-GGC----------AGGUuuUUGCAG--CCGu -5'
5422 5' -55.4 NC_001798.1 + 151227 0.67 0.909299
Target:  5'- cGGGGCCguccgcggguugcCCGUCCAGAuaaaGUccaCGGCc -3'
miRNA:   3'- -CCCCGGa------------GGCAGGUUUuug-CA---GCCGu -5'
5422 5' -55.4 NC_001798.1 + 53627 0.67 0.905639
Target:  5'- cGGGGCCgCCGcggCCAAGuACGccgccgCGGUg -3'
miRNA:   3'- -CCCCGGaGGCa--GGUUUuUGCa-----GCCGu -5'
5422 5' -55.4 NC_001798.1 + 85997 0.67 0.899992
Target:  5'- cGGGGCg-CUGgcgcaggggggugagCCGGAGACGUgGGCGu -3'
miRNA:   3'- -CCCCGgaGGCa--------------GGUUUUUGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 2506 0.67 0.899353
Target:  5'- cGGGGCgCggcggCCGcggCGGcgGCGUCGGCGg -3'
miRNA:   3'- -CCCCG-Ga----GGCag-GUUuuUGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 106745 0.68 0.878424
Target:  5'- gGGGGCCUCCGgagcccgcggggaUCCGGAGcugcccACGcUCuGCGg -3'
miRNA:   3'- -CCCCGGAGGC-------------AGGUUUU------UGC-AGcCGU- -5'
5422 5' -55.4 NC_001798.1 + 38964 0.68 0.877
Target:  5'- cGGcGGCCgCCGuUCCGAugauaggguccuggGGGCGgagCGGCAg -3'
miRNA:   3'- -CC-CCGGaGGC-AGGUU--------------UUUGCa--GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 1257 0.68 0.87195
Target:  5'- cGGGCC-CgCGUCCGcgu-CGUCGcGCAg -3'
miRNA:   3'- cCCCGGaG-GCAGGUuuuuGCAGC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.