miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 154099 0.68 0.864555
Target:  5'- cGGGGCgCggCCGgcgCCGGGGACccCGGCGg -3'
miRNA:   3'- -CCCCG-Ga-GGCa--GGUUUUUGcaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 153839 0.66 0.929996
Target:  5'- cGGGGCCUCCGgcgCCuuccccccgcccuCGcUCGGgGg -3'
miRNA:   3'- -CCCCGGAGGCa--GGuuuuu--------GC-AGCCgU- -5'
5422 5' -55.4 NC_001798.1 + 153336 0.66 0.94169
Target:  5'- cGGGCCUCgGgcUCCAGGcACGguccgaugaccgccUCGGCc -3'
miRNA:   3'- cCCCGGAGgC--AGGUUUuUGC--------------AGCCGu -5'
5422 5' -55.4 NC_001798.1 + 152247 0.69 0.798478
Target:  5'- cGGGGCCggggUCCGcCCGGGAGC-UCGuGCc -3'
miRNA:   3'- -CCCCGG----AGGCaGGUUUUUGcAGC-CGu -5'
5422 5' -55.4 NC_001798.1 + 151227 0.67 0.909299
Target:  5'- cGGGGCCguccgcggguugcCCGUCCAGAuaaaGUccaCGGCc -3'
miRNA:   3'- -CCCCGGa------------GGCAGGUUUuug-CA---GCCGu -5'
5422 5' -55.4 NC_001798.1 + 147238 0.69 0.832961
Target:  5'- gGGGGCC-CCGgggccCCGGGccGCGcCGGCGg -3'
miRNA:   3'- -CCCCGGaGGCa----GGUUUu-UGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 146488 0.67 0.88882
Target:  5'- cGGGGCCgggCCGggCCGGcAACGccccgcgccggccgCGGCGg -3'
miRNA:   3'- -CCCCGGa--GGCa-GGUUuUUGCa-------------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 144999 0.67 0.899353
Target:  5'- cGGGGCCUCguagCG-CCAAGAAacauCGUCcGCGg -3'
miRNA:   3'- -CCCCGGAG----GCaGGUUUUU----GCAGcCGU- -5'
5422 5' -55.4 NC_001798.1 + 144299 0.66 0.923093
Target:  5'- -cGGCC-CaGUCCAGGGGCacggaaGUCGGCAg -3'
miRNA:   3'- ccCCGGaGgCAGGUUUUUG------CAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 143298 0.66 0.933547
Target:  5'- aGGGGCCgUCCGcCCcc-GGCGggucgcCGGCc -3'
miRNA:   3'- -CCCCGG-AGGCaGGuuuUUGCa-----GCCGu -5'
5422 5' -55.4 NC_001798.1 + 133902 0.68 0.867538
Target:  5'- uGGGGCCgcgCuCGUUCGAuacacggcaacccccGGGCGUCguGGCAu -3'
miRNA:   3'- -CCCCGGa--G-GCAGGUU---------------UUUGCAG--CCGU- -5'
5422 5' -55.4 NC_001798.1 + 129519 0.7 0.761614
Target:  5'- uGGGCCUCgCGUUCuccGGGGCG-CGGCc -3'
miRNA:   3'- cCCCGGAG-GCAGGu--UUUUGCaGCCGu -5'
5422 5' -55.4 NC_001798.1 + 127941 0.66 0.938419
Target:  5'- cGGGGCC-CCGggCGAAAAgGccCGGCc -3'
miRNA:   3'- -CCCCGGaGGCagGUUUUUgCa-GCCGu -5'
5422 5' -55.4 NC_001798.1 + 127887 0.68 0.867538
Target:  5'- gGGGGCC-CCGgguucccauuggccCCAGAGccccccACGUgGGCAa -3'
miRNA:   3'- -CCCCGGaGGCa-------------GGUUUU------UGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 122424 0.7 0.780309
Target:  5'- cGGaGGCCUgugCCG-CCGAGcGCGUCGuGCGc -3'
miRNA:   3'- -CC-CCGGA---GGCaGGUUUuUGCAGC-CGU- -5'
5422 5' -55.4 NC_001798.1 + 121798 0.75 0.492765
Target:  5'- cGGGGCCgggCCGgCCGu---UGUCGGCAc -3'
miRNA:   3'- -CCCCGGa--GGCaGGUuuuuGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 117182 0.66 0.922545
Target:  5'- cGGGCCUCCaccccggguucggGUUCAccguCGUgCGGCAg -3'
miRNA:   3'- cCCCGGAGG-------------CAGGUuuuuGCA-GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 109984 0.66 0.943056
Target:  5'- -uGGCCUCCGUUCucacGCGcUgGGCGc -3'
miRNA:   3'- ccCCGGAGGCAGGuuuuUGC-AgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 109738 0.67 0.88882
Target:  5'- cGGGGCCUCCucauaaCCAcGgcccuguguacguccGACGUCGcGCGg -3'
miRNA:   3'- -CCCCGGAGGca----GGUuU---------------UUGCAGC-CGU- -5'
5422 5' -55.4 NC_001798.1 + 109271 0.67 0.911692
Target:  5'- cGGGGUUUgCGUUCGucAACG-CGGCc -3'
miRNA:   3'- -CCCCGGAgGCAGGUuuUUGCaGCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.