miRNA display CGI


Results 41 - 60 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 1257 0.68 0.87195
Target:  5'- cGGGCC-CgCGUCCGcgu-CGUCGcGCAg -3'
miRNA:   3'- cCCCGGaG-GCAGGUuuuuGCAGC-CGU- -5'
5422 5' -55.4 NC_001798.1 + 81431 0.68 0.87195
Target:  5'- aGGaGCUggCGUCCGAcGACGcCGGCGg -3'
miRNA:   3'- cCC-CGGagGCAGGUUuUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 76931 0.68 0.87195
Target:  5'- cGGGGCCcCCccCCGGAAgucACGgCGGCGc -3'
miRNA:   3'- -CCCCGGaGGcaGGUUUU---UGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 13681 0.68 0.87195
Target:  5'- aGGGCCgCCGUCCc--GACGcCGGa- -3'
miRNA:   3'- cCCCGGaGGCAGGuuuUUGCaGCCgu -5'
5422 5' -55.4 NC_001798.1 + 73248 0.68 0.870488
Target:  5'- gGGGGCCcCCGgggaccuggaggCCcAAGAUGcCGGCGg -3'
miRNA:   3'- -CCCCGGaGGCa-----------GGuUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 127887 0.68 0.867538
Target:  5'- gGGGGCC-CCGgguucccauuggccCCAGAGccccccACGUgGGCAa -3'
miRNA:   3'- -CCCCGGaGGCa-------------GGUUUU------UGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 133902 0.68 0.867538
Target:  5'- uGGGGCCgcgCuCGUUCGAuacacggcaacccccGGGCGUCguGGCAu -3'
miRNA:   3'- -CCCCGGa--G-GCAGGUU---------------UUUGCAG--CCGU- -5'
5422 5' -55.4 NC_001798.1 + 3000 0.68 0.864555
Target:  5'- cGGGCC-CCGggCgCGGGGGCG-CGGCGg -3'
miRNA:   3'- cCCCGGaGGCa-G-GUUUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 154099 0.68 0.864555
Target:  5'- cGGGGCgCggCCGgcgCCGGGGACccCGGCGg -3'
miRNA:   3'- -CCCCG-Ga-GGCa--GGUUUUUGcaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 35422 0.68 0.864555
Target:  5'- gGGGGCCUaaugCGgCgGGAGGCGUgGGCc -3'
miRNA:   3'- -CCCCGGAg---GCaGgUUUUUGCAgCCGu -5'
5422 5' -55.4 NC_001798.1 + 4850 0.68 0.856952
Target:  5'- cGGGGCgaCgGUCCGGGuuCGgggugggCGGCGg -3'
miRNA:   3'- -CCCCGgaGgCAGGUUUuuGCa------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 47863 0.68 0.856952
Target:  5'- gGGGGCC-CCGU----GGGCGcCGGCGg -3'
miRNA:   3'- -CCCCGGaGGCAgguuUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 3997 0.68 0.849148
Target:  5'- cGGGGCCgcCCGgCCGuGAAGCGgcccgUGGCGu -3'
miRNA:   3'- -CCCCGGa-GGCaGGU-UUUUGCa----GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 91128 0.68 0.849148
Target:  5'- gGGGGCgUCCucGUCCAGcGAACG-CGGg- -3'
miRNA:   3'- -CCCCGgAGG--CAGGUU-UUUGCaGCCgu -5'
5422 5' -55.4 NC_001798.1 + 36797 0.68 0.844371
Target:  5'- cGGGGaCCUCgGUUgGGcgacgucugcggucuAGugGUCGGCGu -3'
miRNA:   3'- -CCCC-GGAGgCAGgUU---------------UUugCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 105296 0.68 0.841149
Target:  5'- -cGGUCUCCagcgccUCC-AGGGCGUCGGCGa -3'
miRNA:   3'- ccCCGGAGGc-----AGGuUUUUGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 98567 0.68 0.841149
Target:  5'- gGGGGCg-CUGguggCCGcgguGGCGUCGGCGg -3'
miRNA:   3'- -CCCCGgaGGCa---GGUuu--UUGCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 50908 0.68 0.841149
Target:  5'- cGGGCCUCCGgCCAcc-AUGUCcgugcgcgGGCAu -3'
miRNA:   3'- cCCCGGAGGCaGGUuuuUGCAG--------CCGU- -5'
5422 5' -55.4 NC_001798.1 + 1514 0.68 0.840338
Target:  5'- cGGcGGCCcggCCGUCCAgcgccggGAGcACGgcgCGGCGg -3'
miRNA:   3'- -CC-CCGGa--GGCAGGU-------UUU-UGCa--GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 147238 0.69 0.832961
Target:  5'- gGGGGCC-CCGgggccCCGGGccGCGcCGGCGg -3'
miRNA:   3'- -CCCCGGaGGCa----GGUUUu-UGCaGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.