Results 21 - 40 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 80288 | 0.66 | 0.923093 |
Target: 5'- cGGGGCaagCUGUCCGAAAccgacccgcugGCGcccuggcgcUCGGCc -3' miRNA: 3'- -CCCCGga-GGCAGGUUUU-----------UGC---------AGCCGu -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 117182 | 0.66 | 0.922545 |
Target: 5'- cGGGCCUCCaccccggguucggGUUCAccguCGUgCGGCAg -3' miRNA: 3'- cCCCGGAGG-------------CAGGUuuuuGCA-GCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 46540 | 0.66 | 0.915789 |
Target: 5'- gGGuGGCCcggaUGUCCAGAAACGUCacgucgacccggagGGCc -3' miRNA: 3'- -CC-CCGGag--GCAGGUUUUUGCAG--------------CCGu -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 103710 | 0.67 | 0.911692 |
Target: 5'- cGGGGCCcgCCGuuguugcgugUCCGccGACGUCcgGGCc -3' miRNA: 3'- -CCCCGGa-GGC----------AGGUuuUUGCAG--CCGu -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 109271 | 0.67 | 0.911692 |
Target: 5'- cGGGGUUUgCGUUCGucAACG-CGGCc -3' miRNA: 3'- -CCCCGGAgGCAGGUuuUUGCaGCCGu -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 151227 | 0.67 | 0.909299 |
Target: 5'- cGGGGCCguccgcggguugcCCGUCCAGAuaaaGUccaCGGCc -3' miRNA: 3'- -CCCCGGa------------GGCAGGUUUuug-CA---GCCGu -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 53627 | 0.67 | 0.905639 |
Target: 5'- cGGGGCCgCCGcggCCAAGuACGccgccgCGGUg -3' miRNA: 3'- -CCCCGGaGGCa--GGUUUuUGCa-----GCCGu -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 85997 | 0.67 | 0.899992 |
Target: 5'- cGGGGCg-CUGgcgcaggggggugagCCGGAGACGUgGGCGu -3' miRNA: 3'- -CCCCGgaGGCa--------------GGUUUUUGCAgCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 4736 | 0.67 | 0.899353 |
Target: 5'- -cGGCCUCCccggacgCCGGGGccgccuCGUCGGCAu -3' miRNA: 3'- ccCCGGAGGca-----GGUUUUu-----GCAGCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 144999 | 0.67 | 0.899353 |
Target: 5'- cGGGGCCUCguagCG-CCAAGAAacauCGUCcGCGg -3' miRNA: 3'- -CCCCGGAG----GCaGGUUUUU----GCAGcCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 2506 | 0.67 | 0.899353 |
Target: 5'- cGGGGCgCggcggCCGcggCGGcgGCGUCGGCGg -3' miRNA: 3'- -CCCCG-Ga----GGCag-GUUuuUGCAGCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 54152 | 0.67 | 0.898712 |
Target: 5'- uGGGCCUCCGacagCCuGAAcaacgaguaccuuACGgCGGCGg -3' miRNA: 3'- cCCCGGAGGCa---GGuUUU-------------UGCaGCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 102355 | 0.67 | 0.890839 |
Target: 5'- -uGGUCUCCGgcggccgCCGGAAGCccacccgccuggcgGUCGGCGg -3' miRNA: 3'- ccCCGGAGGCa------GGUUUUUG--------------CAGCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 146488 | 0.67 | 0.88882 |
Target: 5'- cGGGGCCgggCCGggCCGGcAACGccccgcgccggccgCGGCGg -3' miRNA: 3'- -CCCCGGa--GGCa-GGUUuUUGCa-------------GCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 109738 | 0.67 | 0.88882 |
Target: 5'- cGGGGCCUCCucauaaCCAcGgcccuguguacguccGACGUCGcGCGg -3' miRNA: 3'- -CCCCGGAGGca----GGUuU---------------UUGCAGC-CGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 6037 | 0.67 | 0.886097 |
Target: 5'- gGGGGCCacagCGagaCAGAGACGcCGGCGg -3' miRNA: 3'- -CCCCGGag--GCag-GUUUUUGCaGCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 64107 | 0.67 | 0.886097 |
Target: 5'- cGGGGCCgccCCGgcccCCGAc-GCGUgGGUAu -3' miRNA: 3'- -CCCCGGa--GGCa---GGUUuuUGCAgCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 104501 | 0.68 | 0.879133 |
Target: 5'- -uGGCCg-CGUgCCAAAAACG-CGGCGg -3' miRNA: 3'- ccCCGGagGCA-GGUUUUUGCaGCCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 106745 | 0.68 | 0.878424 |
Target: 5'- gGGGGCCUCCGgagcccgcggggaUCCGGAGcugcccACGcUCuGCGg -3' miRNA: 3'- -CCCCGGAGGC-------------AGGUUUU------UGC-AGcCGU- -5' |
|||||||
5422 | 5' | -55.4 | NC_001798.1 | + | 38964 | 0.68 | 0.877 |
Target: 5'- cGGcGGCCgCCGuUCCGAugauaggguccuggGGGCGgagCGGCAg -3' miRNA: 3'- -CC-CCGGaGGC-AGGUU--------------UUUGCa--GCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home