miRNA display CGI


Results 41 - 60 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 153838 0.66 0.400566
Target:  5'- gCGGGgCCuCCGGCGCCuuc-CCCCCGc -3'
miRNA:   3'- -GUCCaGGcGGCCGCGGugccGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 3770 0.66 0.400566
Target:  5'- uCGGG--CGCCcacacgGGCGCCGgGGCgCCCGa -3'
miRNA:   3'- -GUCCagGCGG------CCGCGGUgCCGgGGGC- -5'
5423 3' -67.8 NC_001798.1 + 39472 0.66 0.400566
Target:  5'- aGGGgggGCCuGGCgcgugccucgugGCCGCgGGCCCCCGg -3'
miRNA:   3'- gUCCaggCGG-CCG------------CGGUG-CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 149246 0.66 0.400566
Target:  5'- gCGGGggcgucgCCgGCCGGCGCgggCGCGcccuGCUCCCGa -3'
miRNA:   3'- -GUCCa------GG-CGGCCGCG---GUGC----CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 53043 0.66 0.400566
Target:  5'- cCGGGacgcggcauaccUCCGaCCGGCGg---GGCCCCCGa -3'
miRNA:   3'- -GUCC------------AGGC-GGCCGCggugCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 81538 0.66 0.400566
Target:  5'- -cGGcCCaucggGCCGGCaGCUACGGCUCgCGa -3'
miRNA:   3'- guCCaGG-----CGGCCG-CGGUGCCGGGgGC- -5'
5423 3' -67.8 NC_001798.1 + 149493 0.66 0.399781
Target:  5'- gCAGGUCCGCCacguuccccgucuGGU-CCACgaggaccacguaGGCCCCUa -3'
miRNA:   3'- -GUCCAGGCGG-------------CCGcGGUG------------CCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 147218 0.66 0.399781
Target:  5'- cCGGGcCC-CCGGCGgagcgcgggggccCCGgGGCCCCgGg -3'
miRNA:   3'- -GUCCaGGcGGCCGC-------------GGUgCCGGGGgC- -5'
5423 3' -67.8 NC_001798.1 + 95383 0.66 0.398214
Target:  5'- gCGGGgcggcggUCGCCagcagcguguuuguGGCgaccgucaagaGCCugGGCCCCCGc -3'
miRNA:   3'- -GUCCa------GGCGG--------------CCG-----------CGGugCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 77830 0.66 0.397433
Target:  5'- cCGGGacuUCCGCaacgcgccgagcaGGCGCuCGCGGCCaacgCCGa -3'
miRNA:   3'- -GUCC---AGGCGg------------CCGCG-GUGCCGGg---GGC- -5'
5423 3' -67.8 NC_001798.1 + 1739 0.66 0.392762
Target:  5'- gCAGGUcccgcgCCGCCGGCcaGCgCACGGCgCaCUGc -3'
miRNA:   3'- -GUCCA------GGCGGCCG--CG-GUGCCGgG-GGC- -5'
5423 3' -67.8 NC_001798.1 + 3513 0.66 0.392762
Target:  5'- -cGG-CCGCCacguGCGCCA-GGCCCCa- -3'
miRNA:   3'- guCCaGGCGGc---CGCGGUgCCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 126465 0.66 0.392762
Target:  5'- gCAGGUCCGagaCGGCcaugaCCuc-GCCCCCGu -3'
miRNA:   3'- -GUCCAGGCg--GCCGc----GGugcCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 28350 0.66 0.392762
Target:  5'- ---cUgCGCCGGCG--GCGGCCCCCc -3'
miRNA:   3'- guccAgGCGGCCGCggUGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 105407 0.66 0.392762
Target:  5'- cCAGGgCCGCCGcG-GCCGCGGUgCgCUGg -3'
miRNA:   3'- -GUCCaGGCGGC-CgCGGUGCCGgG-GGC- -5'
5423 3' -67.8 NC_001798.1 + 30441 0.66 0.392762
Target:  5'- -cGGcCCccgGCCGaGCGCCAgGGCagCCCCa -3'
miRNA:   3'- guCCaGG---CGGC-CGCGGUgCCG--GGGGc -5'
5423 3' -67.8 NC_001798.1 + 152993 0.66 0.392762
Target:  5'- cCGGGaa-GCCGGCGCgggGCGGUCgCCGg -3'
miRNA:   3'- -GUCCaggCGGCCGCGg--UGCCGGgGGC- -5'
5423 3' -67.8 NC_001798.1 + 21803 0.66 0.385824
Target:  5'- cCGGGcCCGCCucggGGCGgagcccgcgggaugaCGCGGgCCCCGg -3'
miRNA:   3'- -GUCCaGGCGG----CCGCg--------------GUGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 107411 0.66 0.385058
Target:  5'- gAGGaCUgggGCCGGCugacgggggucGCCGCGGCgaCCCCGc -3'
miRNA:   3'- gUCCaGG---CGGCCG-----------CGGUGCCG--GGGGC- -5'
5423 3' -67.8 NC_001798.1 + 32782 0.66 0.385058
Target:  5'- gCAGGgCgCGCCcGCGCCggccgGCGacGCCCCCGc -3'
miRNA:   3'- -GUCCaG-GCGGcCGCGG-----UGC--CGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.