miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 2797 0.66 0.416466
Target:  5'- gCGGGcUCCGCgGcaGCGCCGggcccaGGgCCCCGg -3'
miRNA:   3'- -GUCC-AGGCGgC--CGCGGUg-----CCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 111730 0.66 0.416466
Target:  5'- -uGGcCCGCuUGGCcCC-CGcGCCCCCGg -3'
miRNA:   3'- guCCaGGCG-GCCGcGGuGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 99128 0.66 0.416466
Target:  5'- gGGGUCUGCC-GCuCCACGGCCaaguaCGu -3'
miRNA:   3'- gUCCAGGCGGcCGcGGUGCCGGgg---GC- -5'
5423 3' -67.8 NC_001798.1 + 23797 0.66 0.416466
Target:  5'- gCGGGgagCCGuggcCCGGgGCC--GGCCCCCc -3'
miRNA:   3'- -GUCCa--GGC----GGCCgCGGugCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 31984 0.66 0.416466
Target:  5'- gGGGgCCaagagGgCGGCGCCGCgccgGGCCCCgGa -3'
miRNA:   3'- gUCCaGG-----CgGCCGCGGUG----CCGGGGgC- -5'
5423 3' -67.8 NC_001798.1 + 96663 0.66 0.416466
Target:  5'- ----cCCGagCGGCGCCACGGCCgCgCUGg -3'
miRNA:   3'- guccaGGCg-GCCGCGGUGCCGG-G-GGC- -5'
5423 3' -67.8 NC_001798.1 + 101768 0.66 0.416466
Target:  5'- uGGGccgcgCUGCUGGCGUUAacuaaggccCGGCCUCCGc -3'
miRNA:   3'- gUCCa----GGCGGCCGCGGU---------GCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 96994 0.66 0.416466
Target:  5'- gCGGGgCCaggGCCGGC-CCGCcGCCCgCCGa -3'
miRNA:   3'- -GUCCaGG---CGGCCGcGGUGcCGGG-GGC- -5'
5423 3' -67.8 NC_001798.1 + 80929 0.66 0.416466
Target:  5'- ----aUCGCCGaGCGCCcucucgccgACgGGCCCCCGu -3'
miRNA:   3'- guccaGGCGGC-CGCGG---------UG-CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 75040 0.66 0.408468
Target:  5'- aAGGcccCCGUCGcCGCCGaGGUCCCCGc -3'
miRNA:   3'- gUCCa--GGCGGCcGCGGUgCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 93288 0.66 0.408468
Target:  5'- uCGGGgcguacCUGgCGcGCGCCGCGGgCCUCGu -3'
miRNA:   3'- -GUCCa-----GGCgGC-CGCGGUGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 120216 0.66 0.408468
Target:  5'- uCGGG-CC-CCGG-GCCguuGGCCCCCGc -3'
miRNA:   3'- -GUCCaGGcGGCCgCGGug-CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 134638 0.66 0.408468
Target:  5'- gAGGUgUGCgaGGUcgGCCuGCGGCCCCgCGg -3'
miRNA:   3'- gUCCAgGCGg-CCG--CGG-UGCCGGGG-GC- -5'
5423 3' -67.8 NC_001798.1 + 124117 0.66 0.408468
Target:  5'- ---uUCCGCCaacGCGCUgugGCGcGCCCCCGc -3'
miRNA:   3'- guccAGGCGGc--CGCGG---UGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 147105 0.66 0.408468
Target:  5'- --cGUUCGCgaaaGGCGCgaaaGgGGCCCCCGg -3'
miRNA:   3'- gucCAGGCGg---CCGCGg---UgCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 23116 0.66 0.408468
Target:  5'- -cGGcCCGCuCGccuucucCGCCGCGGaCCCCCu -3'
miRNA:   3'- guCCaGGCG-GCc------GCGGUGCC-GGGGGc -5'
5423 3' -67.8 NC_001798.1 + 48082 0.66 0.406087
Target:  5'- uCAGcaCCGCCccaccgagccccacGGCGCCGUGGacCCCCCGg -3'
miRNA:   3'- -GUCcaGGCGG--------------CCGCGGUGCC--GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 47861 0.66 0.403715
Target:  5'- cCGGGggccCCGUgGGCGCCGgCGGgcgcucgcacgccccUCCCCGc -3'
miRNA:   3'- -GUCCa---GGCGgCCGCGGU-GCC---------------GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 53043 0.66 0.400566
Target:  5'- cCGGGacgcggcauaccUCCGaCCGGCGg---GGCCCCCGa -3'
miRNA:   3'- -GUCC------------AGGC-GGCCGCggugCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 149246 0.66 0.400566
Target:  5'- gCGGGggcgucgCCgGCCGGCGCgggCGCGcccuGCUCCCGa -3'
miRNA:   3'- -GUCCa------GG-CGGCCGCG---GUGC----CGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.