miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 34859 0.74 0.126457
Target:  5'- gCGGGggacgccuUCCGcCCGGCGCCggGCGGCUaCCCGg -3'
miRNA:   3'- -GUCC--------AGGC-GGCCGCGG--UGCCGG-GGGC- -5'
5423 3' -67.8 NC_001798.1 + 79963 0.74 0.129514
Target:  5'- -cGGagCGgCGGCGCCGCguccgccgccgGGCCCCCGg -3'
miRNA:   3'- guCCagGCgGCCGCGGUG-----------CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 72838 0.74 0.129514
Target:  5'- uCAGG-CCGCaCGcGCGgCACGGgCCCCGa -3'
miRNA:   3'- -GUCCaGGCG-GC-CGCgGUGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 109646 0.74 0.132639
Target:  5'- -uGGUCCGCCGaGCgcuguuuuacGCCACGGCCguccUCCGg -3'
miRNA:   3'- guCCAGGCGGC-CG----------CGGUGCCGG----GGGC- -5'
5423 3' -67.8 NC_001798.1 + 3897 0.74 0.132639
Target:  5'- gCGGGgggCCGgccCCGG-GCCACGGCuCCCCGc -3'
miRNA:   3'- -GUCCa--GGC---GGCCgCGGUGCCG-GGGGC- -5'
5423 3' -67.8 NC_001798.1 + 147165 0.73 0.135511
Target:  5'- cCGGGUagCCGcCCGGCGCCggGCGGaaggcguCCCCCGc -3'
miRNA:   3'- -GUCCA--GGC-GGCCGCGG--UGCC-------GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 128836 0.73 0.135833
Target:  5'- -cGGaCC-CCGGCGCCcccGCGGCCUCCGc -3'
miRNA:   3'- guCCaGGcGGCCGCGG---UGCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 153051 0.73 0.139098
Target:  5'- -cGGUUgGCCGGCGCCGC--CCCCUGg -3'
miRNA:   3'- guCCAGgCGGCCGCGGUGccGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 67304 0.73 0.142435
Target:  5'- gAGGuUCCGCCGaGCGCCacgACGGCgguucggccauCCCCGc -3'
miRNA:   3'- gUCC-AGGCGGC-CGCGG---UGCCG-----------GGGGC- -5'
5423 3' -67.8 NC_001798.1 + 121971 0.73 0.142435
Target:  5'- -cGGUCCG-CGcGCGCCccaagcacGCGGCCUCCGg -3'
miRNA:   3'- guCCAGGCgGC-CGCGG--------UGCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 116846 0.73 0.142435
Target:  5'- aCGGGgcgcugCaCGCCGGCGUgcugcuCAUGGCCCCCc -3'
miRNA:   3'- -GUCCa-----G-GCGGCCGCG------GUGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 57201 0.73 0.145845
Target:  5'- gCGGGUCCGUUcgguugggGGCGCUGucauacaccaguUGGCCCCCGg -3'
miRNA:   3'- -GUCCAGGCGG--------CCGCGGU------------GCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 145485 0.73 0.148276
Target:  5'- -cGG-CCGCCGcGCGCCcccgcccggccgccGCGcGCCCCCGc -3'
miRNA:   3'- guCCaGGCGGC-CGCGG--------------UGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 145443 0.73 0.148276
Target:  5'- -cGG-CCGCCGcGCGCCcccgcccggccgccGCGcGCCCCCGc -3'
miRNA:   3'- guCCaGGCGGC-CGCGG--------------UGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 28805 0.73 0.149329
Target:  5'- gCGGGUCCuCCGcCGCCGCGGgCCCgGg -3'
miRNA:   3'- -GUCCAGGcGGCcGCGGUGCCgGGGgC- -5'
5423 3' -67.8 NC_001798.1 + 141117 0.73 0.149329
Target:  5'- cCGGGacgCCGCCGGCGCaucggcaacCAgGGCCgCCGa -3'
miRNA:   3'- -GUCCa--GGCGGCCGCG---------GUgCCGGgGGC- -5'
5423 3' -67.8 NC_001798.1 + 81740 0.73 0.156526
Target:  5'- gCAGGUcCCGCCGGaCGCgugccaaauCGCGcGCgCCCCGg -3'
miRNA:   3'- -GUCCA-GGCGGCC-GCG---------GUGC-CG-GGGGC- -5'
5423 3' -67.8 NC_001798.1 + 58326 0.72 0.160241
Target:  5'- uCAGGcCCGCCGcCGCgu-GGCCCCCGa -3'
miRNA:   3'- -GUCCaGGCGGCcGCGgugCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 72225 0.72 0.160241
Target:  5'- cCAGGggggCCGUCGaGCaGCUGCGGCCCgCGg -3'
miRNA:   3'- -GUCCa---GGCGGC-CG-CGGUGCCGGGgGC- -5'
5423 3' -67.8 NC_001798.1 + 25282 0.72 0.16327
Target:  5'- cCGGGgcccagccacaCGCCGGCGCCcuCGGCCgCCGc -3'
miRNA:   3'- -GUCCag---------GCGGCCGCGGu-GCCGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.