miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 3968 0.67 0.369208
Target:  5'- gAGGcCgCGUCGGCguccagcucgaccGCCGgGGCCgCCCGg -3'
miRNA:   3'- gUCCaG-GCGGCCG-------------CGGUgCCGG-GGGC- -5'
5423 3' -67.8 NC_001798.1 + 4050 0.75 0.096987
Target:  5'- gCGGGcCCGgCGGCGCUccagGCGGCCCgCGg -3'
miRNA:   3'- -GUCCaGGCgGCCGCGG----UGCCGGGgGC- -5'
5423 3' -67.8 NC_001798.1 + 4090 0.68 0.327119
Target:  5'- gGGGUCCggGCCGGgGCgGgcuCGGCCCUg- -3'
miRNA:   3'- gUCCAGG--CGGCCgCGgU---GCCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 4121 0.71 0.201954
Target:  5'- gCGGGcUCgGCCggGGCGCCGCccccggGGCCCUCGc -3'
miRNA:   3'- -GUCC-AGgCGG--CCGCGGUG------CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 4906 0.74 0.1174
Target:  5'- cCGGGgCCGCCGGUcgucuccGCCGCGGCCCg-- -3'
miRNA:   3'- -GUCCaGGCGGCCG-------CGGUGCCGGGggc -5'
5423 3' -67.8 NC_001798.1 + 4955 0.68 0.320348
Target:  5'- --cGUCCGCCaucGCGaCCuCGGCCCCgCGg -3'
miRNA:   3'- gucCAGGCGGc--CGC-GGuGCCGGGG-GC- -5'
5423 3' -67.8 NC_001798.1 + 5528 0.69 0.252227
Target:  5'- cCGGGUUCgugguaaugagauGCCGGCcCCGCgcucccguuGGCCCCCGc -3'
miRNA:   3'- -GUCCAGG-------------CGGCCGcGGUG---------CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 5610 0.66 0.432746
Target:  5'- -uGGUCCGCgGGCGgCuCcGCCCCa- -3'
miRNA:   3'- guCCAGGCGgCCGCgGuGcCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 12183 0.71 0.188534
Target:  5'- gCAGGUCCucuuccacgaaGCCcuggGGCcCCACGGCCCCgGc -3'
miRNA:   3'- -GUCCAGG-----------CGG----CCGcGGUGCCGGGGgC- -5'
5423 3' -67.8 NC_001798.1 + 15250 0.66 0.382766
Target:  5'- uGGGUCCGUuggggggguacgggCGGUGCCcCGGgUUCCGg -3'
miRNA:   3'- gUCCAGGCG--------------GCCGCGGuGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 15530 0.67 0.369952
Target:  5'- gAGGcgCUGCUGGUguucguguGCC-CGGCCCCgGg -3'
miRNA:   3'- gUCCa-GGCGGCCG--------CGGuGCCGGGGgC- -5'
5423 3' -67.8 NC_001798.1 + 16640 0.7 0.221131
Target:  5'- gCAGGUcuugCCGcCCGGCGuCCGCGGaaCCCa -3'
miRNA:   3'- -GUCCA----GGC-GGCCGC-GGUGCCggGGGc -5'
5423 3' -67.8 NC_001798.1 + 16767 0.67 0.333304
Target:  5'- -uGGUCCGgggacacCCGaccCGCCGCGuGUCCCCGg -3'
miRNA:   3'- guCCAGGC-------GGCc--GCGGUGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 17077 0.68 0.307121
Target:  5'- gCGGGUCCacGCCGGUcggguccacGCCGgacgauuguuccCGGCCgCCCGc -3'
miRNA:   3'- -GUCCAGG--CGGCCG---------CGGU------------GCCGG-GGGC- -5'
5423 3' -67.8 NC_001798.1 + 19013 0.67 0.355257
Target:  5'- -cGGcUCCuGCaucaaGaGCGCCcCGGCCCCCa -3'
miRNA:   3'- guCC-AGG-CGg----C-CGCGGuGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 20248 0.68 0.325076
Target:  5'- cCAGGuUCCGCCcgagaucugcagcaGGCgGCCccacgugcGCGGCCCCa- -3'
miRNA:   3'- -GUCC-AGGCGG--------------CCG-CGG--------UGCCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 21317 0.68 0.313682
Target:  5'- -cGGcCCcCCGGCcCCcCGGCCCCCc -3'
miRNA:   3'- guCCaGGcGGCCGcGGuGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 21644 0.69 0.274701
Target:  5'- -cGGUgccccgcucgCCGCCGGCGUCucugucucgcugUGGCCCCCu -3'
miRNA:   3'- guCCA----------GGCGGCCGCGGu-----------GCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 21803 0.66 0.385824
Target:  5'- cCGGGcCCGCCucggGGCGgagcccgcgggaugaCGCGGgCCCCGg -3'
miRNA:   3'- -GUCCaGGCGG----CCGCg--------------GUGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 23116 0.66 0.408468
Target:  5'- -cGGcCCGCuCGccuucucCGCCGCGGaCCCCCu -3'
miRNA:   3'- guCCaGGCG-GCc------GCGGUGCC-GGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.