miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 149 0.66 0.432746
Target:  5'- ----cCCGCgGGCGCCGCcccucCCCCCGc -3'
miRNA:   3'- guccaGGCGgCCGCGGUGcc---GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 180 0.66 0.42456
Target:  5'- gCGGGgcugccuucCCGCgGGCGCCcccgcGCGGCUuuuuuCCCGc -3'
miRNA:   3'- -GUCCa--------GGCGgCCGCGG-----UGCCGG-----GGGC- -5'
5423 3' -67.8 NC_001798.1 + 1188 0.66 0.432746
Target:  5'- ----gCCGCCGccCGCCGCGGCCagcaCCGu -3'
miRNA:   3'- guccaGGCGGCc-GCGGUGCCGGg---GGC- -5'
5423 3' -67.8 NC_001798.1 + 1352 0.68 0.313682
Target:  5'- gCAGcUCCGCCGGgcCGCCGCGcacggcgucgcGCCCCa- -3'
miRNA:   3'- -GUCcAGGCGGCC--GCGGUGC-----------CGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 1402 0.66 0.42456
Target:  5'- aCGGG-CCGCagCGGCGCgCccaGGCCCCa- -3'
miRNA:   3'- -GUCCaGGCG--GCCGCG-Gug-CCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 1476 0.67 0.362553
Target:  5'- -cGG-CgCGCCgGGCGCCAUGGCgucgCCCGc -3'
miRNA:   3'- guCCaG-GCGG-CCGCGGUGCCGg---GGGC- -5'
5423 3' -67.8 NC_001798.1 + 1739 0.66 0.392762
Target:  5'- gCAGGUcccgcgCCGCCGGCcaGCgCACGGCgCaCUGc -3'
miRNA:   3'- -GUCCA------GGCGGCCG--CG-GUGCCGgG-GGC- -5'
5423 3' -67.8 NC_001798.1 + 1825 0.66 0.384293
Target:  5'- aCGGGcCCGUCGGCGggccaguCCGCGGCgCgCa -3'
miRNA:   3'- -GUCCaGGCGGCCGC-------GGUGCCGgGgGc -5'
5423 3' -67.8 NC_001798.1 + 2101 0.69 0.288072
Target:  5'- gGGGcCCGCCcccGGCGCggccCGCGGCCagguccucgCCCGg -3'
miRNA:   3'- gUCCaGGCGG---CCGCG----GUGCCGG---------GGGC- -5'
5423 3' -67.8 NC_001798.1 + 2201 0.69 0.264135
Target:  5'- cCAGGccgCCGCgCGGCGCaGCGGgCCCg- -3'
miRNA:   3'- -GUCCa--GGCG-GCCGCGgUGCCgGGGgc -5'
5423 3' -67.8 NC_001798.1 + 2358 0.69 0.258409
Target:  5'- -uGGUCCGUgaGCucgGCCACGGCCCgCGg -3'
miRNA:   3'- guCCAGGCGgcCG---CGGUGCCGGGgGC- -5'
5423 3' -67.8 NC_001798.1 + 2415 0.71 0.206608
Target:  5'- gAGGg-CGCCGGCGUguggCugGGCCCCgGc -3'
miRNA:   3'- gUCCagGCGGCCGCG----GugCCGGGGgC- -5'
5423 3' -67.8 NC_001798.1 + 2516 0.69 0.260687
Target:  5'- -cGG-CCGCggcggCGGCGUCggcggggcggggggcGCGGCCCCCGc -3'
miRNA:   3'- guCCaGGCG-----GCCGCGG---------------UGCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 2758 0.66 0.400566
Target:  5'- gCAGGUCCGCggCGGCgGCgGCGGCggagCUCa -3'
miRNA:   3'- -GUCCAGGCG--GCCG-CGgUGCCGg---GGGc -5'
5423 3' -67.8 NC_001798.1 + 2797 0.66 0.416466
Target:  5'- gCGGGcUCCGCgGcaGCGCCGggcccaGGgCCCCGg -3'
miRNA:   3'- -GUCC-AGGCGgC--CGCGGUg-----CCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 2983 0.76 0.090151
Target:  5'- gCGGGgCgGCCGGC-CCGCGGgCCCCGg -3'
miRNA:   3'- -GUCCaGgCGGCCGcGGUGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 3513 0.66 0.392762
Target:  5'- -cGG-CCGCCacguGCGCCA-GGCCCCa- -3'
miRNA:   3'- guCCaGGCGGc---CGCGGUgCCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 3643 0.67 0.377454
Target:  5'- gCAGGcCUGguCCaGCGCCAC-GUCCCCGg -3'
miRNA:   3'- -GUCCaGGC--GGcCGCGGUGcCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 3770 0.66 0.400566
Target:  5'- uCGGG--CGCCcacacgGGCGCCGgGGCgCCCGa -3'
miRNA:   3'- -GUCCagGCGG------CCGCGGUgCCGgGGGC- -5'
5423 3' -67.8 NC_001798.1 + 3897 0.74 0.132639
Target:  5'- gCGGGgggCCGgccCCGG-GCCACGGCuCCCCGc -3'
miRNA:   3'- -GUCCa--GGC---GGCCgCGGUGCCG-GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.