miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 154518 0.66 0.42456
Target:  5'- gCGGGgcugccuucCCGCgGGCGCCcccgcGCGGCUuuuuuCCCGc -3'
miRNA:   3'- -GUCCa--------GGCGgCCGCGG-----UGCCGG-----GGGC- -5'
5423 3' -67.8 NC_001798.1 + 154487 0.66 0.432746
Target:  5'- ----cCCGCgGGCGCCGCcccucCCCCCGc -3'
miRNA:   3'- guccaGGCGgCCGCGGUGcc---GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 154098 0.78 0.06713
Target:  5'- cCGGGgcgCgGCCGGCGCCGgGGaCCCCGg -3'
miRNA:   3'- -GUCCa--GgCGGCCGCGGUgCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 153969 0.7 0.221131
Target:  5'- gAGGacgCgGCCGGCGCgcucucgacCGCGGUUCCCGa -3'
miRNA:   3'- gUCCa--GgCGGCCGCG---------GUGCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 153838 0.66 0.400566
Target:  5'- gCGGGgCCuCCGGCGCCuuc-CCCCCGc -3'
miRNA:   3'- -GUCCaGGcGGCCGCGGugccGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 153691 0.66 0.400566
Target:  5'- gCGGGggccgCCGCCGGCGCa--GGCUCa-- -3'
miRNA:   3'- -GUCCa----GGCGGCCGCGgugCCGGGggc -5'
5423 3' -67.8 NC_001798.1 + 153409 0.66 0.385058
Target:  5'- -cGGcCCGCuCGcGCGCC-CaGGaCCCCCGu -3'
miRNA:   3'- guCCaGGCG-GC-CGCGGuG-CC-GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 153176 0.67 0.355257
Target:  5'- gGGGcUCCGCCGGcCGagGCcGCCCUCGc -3'
miRNA:   3'- gUCC-AGGCGGCC-GCggUGcCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 153051 0.73 0.139098
Target:  5'- -cGGUUgGCCGGCGCCGC--CCCCUGg -3'
miRNA:   3'- guCCAGgCGGCCGCGGUGccGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 152993 0.66 0.392762
Target:  5'- cCGGGaa-GCCGGCGCgggGCGGUCgCCGg -3'
miRNA:   3'- -GUCCaggCGGCCGCGg--UGCCGGgGGC- -5'
5423 3' -67.8 NC_001798.1 + 152643 0.69 0.260687
Target:  5'- -cGGcgccCCGCCGGCGCgGCccugaguggugcccGCCCCCGg -3'
miRNA:   3'- guCCa---GGCGGCCGCGgUGc-------------CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 152225 0.68 0.300027
Target:  5'- gGGGUCUGCCgcggcggccgcucGGgGCCGgGGuCCgCCCGg -3'
miRNA:   3'- gUCCAGGCGG-------------CCgCGGUgCC-GG-GGGC- -5'
5423 3' -67.8 NC_001798.1 + 152044 0.68 0.307121
Target:  5'- aGGGUCggggggcggCGCaCGGC-CCACGGggguCCCCCGa -3'
miRNA:   3'- gUCCAG---------GCG-GCCGcGGUGCC----GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 151274 0.72 0.171866
Target:  5'- -cGGcCCGCaCGGcCGCCuCGGCCUCCa -3'
miRNA:   3'- guCCaGGCG-GCC-GCGGuGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 150876 0.69 0.288072
Target:  5'- gAGGuUCCGCgGGuCGCCcccgcaccGCcGCCCCCGc -3'
miRNA:   3'- gUCC-AGGCGgCC-GCGG--------UGcCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 150239 0.68 0.300666
Target:  5'- nGGGUCCuCCcuccGCGCC-CGGCCCUCc -3'
miRNA:   3'- gUCCAGGcGGc---CGCGGuGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 150211 0.7 0.231289
Target:  5'- cCGGGggUGuuGGUGCCGCGGgggaCCCCGg -3'
miRNA:   3'- -GUCCagGCggCCGCGGUGCCg---GGGGC- -5'
5423 3' -67.8 NC_001798.1 + 150046 0.75 0.101813
Target:  5'- gGGGcCCgGCgCGGCGCCGCccucuuGGCCCCCa -3'
miRNA:   3'- gUCCaGG-CG-GCCGCGGUG------CCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 149687 0.66 0.42946
Target:  5'- uCGGGgCCGCCcucgcguGGCGCgucuuccuggcacaCuuccuCGGCCCCCGc -3'
miRNA:   3'- -GUCCaGGCGG-------CCGCG--------------Gu----GCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 149660 0.7 0.247261
Target:  5'- cCGGG--CGCCGG-GUCGCGGgCCCCGg -3'
miRNA:   3'- -GUCCagGCGGCCgCGGUGCCgGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.