miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 83412 0.83 0.027271
Target:  5'- gAGGUCCGUCaGCGCCGCGGCCugCCCGc -3'
miRNA:   3'- gUCCAGGCGGcCGCGGUGCCGG--GGGC- -5'
5423 3' -67.8 NC_001798.1 + 32057 0.83 0.027271
Target:  5'- cCGGcGUCCGCgGGCGCCGC-GCCCCCGu -3'
miRNA:   3'- -GUC-CAGGCGgCCGCGGUGcCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 35446 0.82 0.035086
Target:  5'- uGGG-CCGCUGGCGCCGCGGCCCg-- -3'
miRNA:   3'- gUCCaGGCGGCCGCGGUGCCGGGggc -5'
5423 3' -67.8 NC_001798.1 + 61860 0.81 0.03978
Target:  5'- gCGGG-CCGCCGGCccaGCCcgGCGGCCCCCu -3'
miRNA:   3'- -GUCCaGGCGGCCG---CGG--UGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 31552 0.78 0.060799
Target:  5'- gAGGUCUGCCacagucgucgggGcGCGCCGCGcGCCCCCGc -3'
miRNA:   3'- gUCCAGGCGG------------C-CGCGGUGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 154098 0.78 0.06713
Target:  5'- cCGGGgcgCgGCCGGCGCCGgGGaCCCCGg -3'
miRNA:   3'- -GUCCa--GgCGGCCGCGGUgCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 23729 0.76 0.085851
Target:  5'- gCGGGUCgaGCUGGaCGCCgacGCGGCCUCCGg -3'
miRNA:   3'- -GUCCAGg-CGGCC-GCGG---UGCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 2983 0.76 0.090151
Target:  5'- gCGGGgCgGCCGGC-CCGCGGgCCCCGg -3'
miRNA:   3'- -GUCCaGgCGGCCGcGGUGCCgGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 4050 0.75 0.096987
Target:  5'- gCGGGcCCGgCGGCGCUccagGCGGCCCgCGg -3'
miRNA:   3'- -GUCCaGGCgGCCGCGG----UGCCGGGgGC- -5'
5423 3' -67.8 NC_001798.1 + 25085 0.75 0.096987
Target:  5'- cCAGGgcgCCGCCgggcGGCGCCcCGcGCCCCCc -3'
miRNA:   3'- -GUCCa--GGCGG----CCGCGGuGC-CGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 150046 0.75 0.101813
Target:  5'- gGGGcCCgGCgCGGCGCCGCccucuuGGCCCCCa -3'
miRNA:   3'- gUCCaGG-CG-GCCGCGGUG------CCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 137950 0.75 0.104311
Target:  5'- -cGGUCCGCCGcGCGCUGCucccgcuccaGcGCCCCCGc -3'
miRNA:   3'- guCCAGGCGGC-CGCGGUG----------C-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 36392 0.75 0.106865
Target:  5'- ---uUCUGCgCGGCGCCGgGGCCCCCc -3'
miRNA:   3'- guccAGGCG-GCCGCGGUgCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 34786 0.75 0.106865
Target:  5'- -cGGaaacgCCGCCGGCGCgGCccggggccccggGGCCCCCGc -3'
miRNA:   3'- guCCa----GGCGGCCGCGgUG------------CCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 31613 0.75 0.106865
Target:  5'- cCGGaGUCCGCCccGCGCCGCcgccGCCCCCGu -3'
miRNA:   3'- -GUC-CAGGCGGc-CGCGGUGc---CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 4906 0.74 0.1174
Target:  5'- cCGGGgCCGCCGGUcgucuccGCCGCGGCCCg-- -3'
miRNA:   3'- -GUCCaGGCGGCCG-------CGGUGCCGGGggc -5'
5423 3' -67.8 NC_001798.1 + 73231 0.74 0.117683
Target:  5'- -cGGccuUCCGCCGGCcCgGgGGCCCCCGg -3'
miRNA:   3'- guCC---AGGCGGCCGcGgUgCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 123399 0.74 0.120543
Target:  5'- cCAGGcCCcCCGGgaGCCGCGGCCCCg- -3'
miRNA:   3'- -GUCCaGGcGGCCg-CGGUGCCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 145400 0.74 0.122877
Target:  5'- gCGGGgaaagcgcgcccCCGcCCGGcCGCCGCGcGCCCCCGc -3'
miRNA:   3'- -GUCCa-----------GGC-GGCC-GCGGUGC-CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 32562 0.74 0.123467
Target:  5'- -cGGaCCuGCUGcGgGCCGCGGCCCCCGc -3'
miRNA:   3'- guCCaGG-CGGC-CgCGGUGCCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.