miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 5' -52.4 NC_001798.1 + 26218 0.87 0.161264
Target:  5'- gCGCGGGcGACGCCAUGGCGCCCGgCg -3'
miRNA:   3'- -GUGUUUuUUGUGGUACCGCGGGCgGg -5'
5423 5' -52.4 NC_001798.1 + 25369 0.83 0.24729
Target:  5'- cCGCucuuccccGCGCCGUGGCGCCCgGCCCu -3'
miRNA:   3'- -GUGuuuuu---UGUGGUACCGCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 1465 0.81 0.338263
Target:  5'- uCGCAGAAGuccggcgcgccggGCGCCAUGGCG-UCGCCCg -3'
miRNA:   3'- -GUGUUUUU-------------UGUGGUACCGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 52359 0.8 0.379723
Target:  5'- gCACGAGGcgcugggcGACACCGcGGCGCgCCGCCUg -3'
miRNA:   3'- -GUGUUUU--------UUGUGGUaCCGCG-GGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 115313 0.79 0.451248
Target:  5'- gCACGccGGGgACC-UGGUGCCCGCCCc -3'
miRNA:   3'- -GUGUuuUUUgUGGuACCGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 5851 0.78 0.460701
Target:  5'- gGCAAAgugcGAGCAC--UGGCGCCCuGCCCg -3'
miRNA:   3'- gUGUUU----UUUGUGguACCGCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 5713 0.78 0.499512
Target:  5'- gGCAAAgugcGAGCGC--UGGCGCCCuGCCCg -3'
miRNA:   3'- gUGUUU----UUUGUGguACCGCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 52301 0.78 0.499512
Target:  5'- aGCAGGAGGCGCUGUuucGCGCCCuGCCCc -3'
miRNA:   3'- gUGUUUUUUGUGGUAc--CGCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 23566 0.77 0.509443
Target:  5'- cCGCGAGGgccccgggggcGGCGCCccGGCcgaGCCCGCCCa -3'
miRNA:   3'- -GUGUUUU-----------UUGUGGuaCCG---CGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 85675 0.77 0.519456
Target:  5'- gACGGcGGggUGCCcgGGCGCCaCGCCCa -3'
miRNA:   3'- gUGUU-UUuuGUGGuaCCGCGG-GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 20770 0.77 0.529545
Target:  5'- cCGCGGGGAGCGac--GGCGCCCGCCg -3'
miRNA:   3'- -GUGUUUUUUGUgguaCCGCGGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 147999 0.77 0.549932
Target:  5'- cCACAGccGugGgUGUGGCGCCCGUCCc -3'
miRNA:   3'- -GUGUUuuUugUgGUACCGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 34527 0.76 0.570555
Target:  5'- aCACGAGAcACACgCA-GGCGCCCcCCCc -3'
miRNA:   3'- -GUGUUUUuUGUG-GUaCCGCGGGcGGG- -5'
5423 5' -52.4 NC_001798.1 + 113503 0.76 0.570555
Target:  5'- gCGCGGcccuguGCGCCcugGUGGCGgCCGCCCa -3'
miRNA:   3'- -GUGUUuuu---UGUGG---UACCGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 3778 0.76 0.585102
Target:  5'- cCACAc-GGGCGCCggGGCGCCCgaggccucgaaccggGCCCg -3'
miRNA:   3'- -GUGUuuUUUGUGGuaCCGCGGG---------------CGGG- -5'
5423 5' -52.4 NC_001798.1 + 25520 0.76 0.59136
Target:  5'- cCugGAu--GCGCCA-GGUGCCCGaCCCg -3'
miRNA:   3'- -GugUUuuuUGUGGUaCCGCGGGC-GGG- -5'
5423 5' -52.4 NC_001798.1 + 96144 0.76 0.601813
Target:  5'- cCACAGcacggccggguGAcuCGCCAUGGCgGCCgCGCCCc -3'
miRNA:   3'- -GUGUU-----------UUuuGUGGUACCG-CGG-GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 35435 0.75 0.61229
Target:  5'- gGCGGGAGGCguggGCCGcUGGCGCCgCgGCCCg -3'
miRNA:   3'- gUGUUUUUUG----UGGU-ACCGCGG-G-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 133778 0.75 0.622783
Target:  5'- gCGCAcgc-ACGCCuccGGCGCCCaGCCCa -3'
miRNA:   3'- -GUGUuuuuUGUGGua-CCGCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 134356 0.75 0.622783
Target:  5'- --gAAAGGGCGUCGUGGgGCCCGCCg -3'
miRNA:   3'- gugUUUUUUGUGGUACCgCGGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.