miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 5' -52.4 NC_001798.1 + 309 0.66 0.982798
Target:  5'- aCGCcAGucGCACCAc--CGCUCGCCCu -3'
miRNA:   3'- -GUGuUUuuUGUGGUaccGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 344 0.74 0.71649
Target:  5'- gACAGuu-GCACCAaGcaccCGCCCGCCCg -3'
miRNA:   3'- gUGUUuuuUGUGGUaCc---GCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 663 0.72 0.775972
Target:  5'- gCGCGGGAGAC---GUGcCGCCCGCCCg -3'
miRNA:   3'- -GUGUUUUUUGuggUACcGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 1278 0.69 0.929183
Target:  5'- gCGCA----GCACCAgcgggGGCGCgUCGCCg -3'
miRNA:   3'- -GUGUuuuuUGUGGUa----CCGCG-GGCGGg -5'
5423 5' -52.4 NC_001798.1 + 1465 0.81 0.338263
Target:  5'- uCGCAGAAGuccggcgcgccggGCGCCAUGGCG-UCGCCCg -3'
miRNA:   3'- -GUGUUUUU-------------UGUGGUACCGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 1951 0.66 0.980714
Target:  5'- aGCAGcAGcACGCCcUGcGCGCCCaGCgCCg -3'
miRNA:   3'- gUGUU-UUuUGUGGuAC-CGCGGG-CG-GG- -5'
5423 5' -52.4 NC_001798.1 + 2008 0.66 0.982798
Target:  5'- cCGCcc-AGGCgGCCGUGGCggGCCCGCa- -3'
miRNA:   3'- -GUGuuuUUUG-UGGUACCG--CGGGCGgg -5'
5423 5' -52.4 NC_001798.1 + 2084 0.74 0.706253
Target:  5'- gGCGGAccACuCCGgggGGgGCCCGCCCc -3'
miRNA:   3'- gUGUUUuuUGuGGUa--CCgCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 2242 0.69 0.911996
Target:  5'- gGCcGAAGGCGgCG-GGCGCgCCGCCg -3'
miRNA:   3'- gUGuUUUUUGUgGUaCCGCG-GGCGGg -5'
5423 5' -52.4 NC_001798.1 + 2605 0.69 0.917976
Target:  5'- -uCGGGGGGCGCgG-GGCG-CCGCCCg -3'
miRNA:   3'- guGUUUUUUGUGgUaCCGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 3241 0.68 0.952823
Target:  5'- gGCGGcGAGCACCcccgcGGCGCCguaGCCg -3'
miRNA:   3'- gUGUUuUUUGUGGua---CCGCGGg--CGGg -5'
5423 5' -52.4 NC_001798.1 + 3495 0.68 0.948589
Target:  5'- gGCGGcucAugGCCAcGGCGgCCGCCa -3'
miRNA:   3'- gUGUUuu-UugUGGUaCCGCgGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 3519 0.67 0.963753
Target:  5'- nCACGu---GCGCCA-GGCcccagccgaagcgGCCCGCCg -3'
miRNA:   3'- -GUGUuuuuUGUGGUaCCG-------------CGGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 3604 0.72 0.813052
Target:  5'- --gAAGGAGCugCuguUGcGCGCCgCGCCCg -3'
miRNA:   3'- gugUUUUUUGugGu--AC-CGCGG-GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 3778 0.76 0.585102
Target:  5'- cCACAc-GGGCGCCggGGCGCCCgaggccucgaaccggGCCCg -3'
miRNA:   3'- -GUGUuuUUUGUGGuaCCGCGGG---------------CGGG- -5'
5423 5' -52.4 NC_001798.1 + 3819 0.67 0.97047
Target:  5'- gCGCcuccucCGCCucgGGCGCCC-CCCa -3'
miRNA:   3'- -GUGuuuuuuGUGGua-CCGCGGGcGGG- -5'
5423 5' -52.4 NC_001798.1 + 3951 0.67 0.960571
Target:  5'- gCGCGuaGAAGGCGCCGgaggccgcgucGGCGUCCaGCUCg -3'
miRNA:   3'- -GUGU--UUUUUGUGGUa----------CCGCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 4008 0.67 0.967393
Target:  5'- gGCcguGAAGCGgcCCGUGGCGUCgCGgCCg -3'
miRNA:   3'- gUGuu-UUUUGU--GGUACCGCGG-GCgGG- -5'
5423 5' -52.4 NC_001798.1 + 4116 0.66 0.984707
Target:  5'- cCugGGcgGGCucgGCCggGGCG-CCGCCCc -3'
miRNA:   3'- -GugUUuuUUG---UGGuaCCGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 4350 0.66 0.984707
Target:  5'- gGCGGccGAGCGCCGgcggGGgGCgCGCCg -3'
miRNA:   3'- gUGUUu-UUUGUGGUa---CCgCGgGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.