miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5428 5' -61.1 NC_001798.1 + 23518 0.66 0.636775
Target:  5'- aCGcCGCGGGCgggACCCUCGgCGCgGAc-- -3'
miRNA:   3'- -GC-GCGCCCG---UGGGGGCgGUGgUUuuu -5'
5428 5' -61.1 NC_001798.1 + 25210 0.66 0.636775
Target:  5'- cCGCGCcccgcGGCGCUgaCCCGCCggcccGCCGAGGg -3'
miRNA:   3'- -GCGCGc----CCGUGG--GGGCGG-----UGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 130994 0.66 0.636775
Target:  5'- gGCGUGuGGCAUCgCcauacgggCCGCCGCCAGGc- -3'
miRNA:   3'- gCGCGC-CCGUGG-G--------GGCGGUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 49139 0.67 0.626791
Target:  5'- aGCGCGGGU-CCCgCGCUguguACCAu--- -3'
miRNA:   3'- gCGCGCCCGuGGGgGCGG----UGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 86914 0.67 0.626791
Target:  5'- aGCGcCGGGC-CUCCCGCaagaGCCu---- -3'
miRNA:   3'- gCGC-GCCCGuGGGGGCGg---UGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 104734 0.67 0.626791
Target:  5'- -cUGCGGGCguccGCUCUCGUCGCCGAu-- -3'
miRNA:   3'- gcGCGCCCG----UGGGGGCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 147179 0.67 0.626791
Target:  5'- gGCGcCGGGCGgaaggcguCCCCCGCCcggcgguCCGGc-- -3'
miRNA:   3'- gCGC-GCCCGU--------GGGGGCGGu------GGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 149567 0.67 0.626791
Target:  5'- aCGgGCaGGCAguCCCCCGUgACCGu--- -3'
miRNA:   3'- -GCgCGcCCGU--GGGGGCGgUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 150476 0.67 0.626791
Target:  5'- gGCGCGcGGCGCgCCCCGaCgACUg---- -3'
miRNA:   3'- gCGCGC-CCGUG-GGGGC-GgUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 116798 0.67 0.626791
Target:  5'- cCGaCGCGGGCGCCaacaCCGCgucgacgGCCAAc-- -3'
miRNA:   3'- -GC-GCGCCCGUGGg---GGCGg------UGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 137918 0.67 0.626791
Target:  5'- cCGC-CGGGCGgcccgcgccuCCCCCGgCCGCCc---- -3'
miRNA:   3'- -GCGcGCCCGU----------GGGGGC-GGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 121409 0.67 0.625792
Target:  5'- gGUGgGGGCgauccuaGCCCCCGUCAUCc---- -3'
miRNA:   3'- gCGCgCCCG-------UGGGGGCGGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 662 0.67 0.61681
Target:  5'- gGCGCGGGagacguGCCgCCCGCCcgACCc---- -3'
miRNA:   3'- gCGCGCCCg-----UGG-GGGCGG--UGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 81803 0.67 0.61681
Target:  5'- gGCGUccgccGGCACuCCCCGCC-CCGGu-- -3'
miRNA:   3'- gCGCGc----CCGUG-GGGGCGGuGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 5556 0.67 0.61681
Target:  5'- cCGCGCucccGUugGCCCCCGCCGgccCCAAAGGg -3'
miRNA:   3'- -GCGCGcc--CG--UGGGGGCGGU---GGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 81730 0.67 0.61681
Target:  5'- cCGCGCGuGCGCagguCCCGCCggacgcguGCCAAAu- -3'
miRNA:   3'- -GCGCGCcCGUGg---GGGCGG--------UGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 112960 0.67 0.615813
Target:  5'- cCGCGCGGuGCuuguuugauuuugGCCUCCGCCccCCAu--- -3'
miRNA:   3'- -GCGCGCC-CG-------------UGGGGGCGGu-GGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 132161 0.67 0.615813
Target:  5'- gGCG-GGGCGCCCCCcccggacGCCcccCCGGAc- -3'
miRNA:   3'- gCGCgCCCGUGGGGG-------CGGu--GGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 75959 0.67 0.615813
Target:  5'- gCGCGcCGGGCcccugaccgugauGCCcgugCCCGCCGCCc---- -3'
miRNA:   3'- -GCGC-GCCCG-------------UGG----GGGCGGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 32793 0.67 0.615813
Target:  5'- cCGCGCcGGCcggcgacGCCCCCgcggGCCACgGGGAGu -3'
miRNA:   3'- -GCGCGcCCG-------UGGGGG----CGGUGgUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.