miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5428 5' -61.1 NC_001798.1 + 4154 0.82 0.067864
Target:  5'- -uCGCGGGCACCCCCGCCuccucgucguccgcGCCGAGGGu -3'
miRNA:   3'- gcGCGCCCGUGGGGGCGG--------------UGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 54815 0.81 0.084269
Target:  5'- gGCGuCGGGCuuggcgccACCCCCGCCGCCGAc-- -3'
miRNA:   3'- gCGC-GCCCG--------UGGGGGCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 149264 0.81 0.086484
Target:  5'- gGCGCGGGCGCgCCCUGCUcCCGAGAc -3'
miRNA:   3'- gCGCGCCCGUG-GGGGCGGuGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 28801 0.81 0.091082
Target:  5'- gCGCGCGGGU-CCUCCGCCGCCGc--- -3'
miRNA:   3'- -GCGCGCCCGuGGGGGCGGUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 27613 0.8 0.095911
Target:  5'- gCGCGCgGGGCugCCCUGCCGCCc---- -3'
miRNA:   3'- -GCGCG-CCCGugGGGGCGGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 135094 0.78 0.133668
Target:  5'- uCGCGCGguGGCACCCCacgGCCACCAc--- -3'
miRNA:   3'- -GCGCGC--CCGUGGGGg--CGGUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 134478 0.78 0.137082
Target:  5'- gGCGUGGGCGCgCCUgGCCGCCAu--- -3'
miRNA:   3'- gCGCGCCCGUG-GGGgCGGUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 117453 0.76 0.193932
Target:  5'- cCGCG-GGGCcCCCCCGCUGCUAGAc- -3'
miRNA:   3'- -GCGCgCCCGuGGGGGCGGUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 56776 0.76 0.193932
Target:  5'- uGCGCgGGGgGCCCUgGCCGCCGAc-- -3'
miRNA:   3'- gCGCG-CCCgUGGGGgCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 54438 0.75 0.203568
Target:  5'- gGCGCGacaacGCACCCCCGCCGCUc---- -3'
miRNA:   3'- gCGCGCc----CGUGGGGGCGGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 25163 0.75 0.218798
Target:  5'- cCGCGgGGGCcgcgcCCCCCGCCccGCCGAc-- -3'
miRNA:   3'- -GCGCgCCCGu----GGGGGCGG--UGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 5614 0.75 0.229484
Target:  5'- -cCGCGGGCGgCUCCGCC-CCAAAGGg -3'
miRNA:   3'- gcGCGCCCGUgGGGGCGGuGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 29019 0.74 0.246337
Target:  5'- cCGCGCGGGCccggacuccGCCCCgGCgACCGc--- -3'
miRNA:   3'- -GCGCGCCCG---------UGGGGgCGgUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 52700 0.74 0.264203
Target:  5'- aCGCGCGGacCACCCCCGCCAa------ -3'
miRNA:   3'- -GCGCGCCc-GUGGGGGCGGUgguuuuu -5'
5428 5' -61.1 NC_001798.1 + 50413 0.74 0.264203
Target:  5'- cCGgGCGGcGCGCCCCCcccCCACCAc--- -3'
miRNA:   3'- -GCgCGCC-CGUGGGGGc--GGUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 112011 0.74 0.264203
Target:  5'- gCGCGCGcacgcGCACCCCgGUCACCAGc-- -3'
miRNA:   3'- -GCGCGCc----CGUGGGGgCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 86062 0.73 0.283106
Target:  5'- -uCGCcGGCACCCCCGCCGuCUggGAGu -3'
miRNA:   3'- gcGCGcCCGUGGGGGCGGU-GGuuUUU- -5'
5428 5' -61.1 NC_001798.1 + 120213 0.73 0.28964
Target:  5'- aGCuCGGGCcccgggccguugGCCCCCGCCgagGCCAGGAu -3'
miRNA:   3'- gCGcGCCCG------------UGGGGGCGG---UGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 154532 0.73 0.28964
Target:  5'- -cCGCGGGCGCCCCCGCgCGgCu---- -3'
miRNA:   3'- gcGCGCCCGUGGGGGCG-GUgGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 25128 0.73 0.28964
Target:  5'- cCGCGCGGacGC-CCCCCGCC-CCGc--- -3'
miRNA:   3'- -GCGCGCC--CGuGGGGGCGGuGGUuuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.