miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5428 5' -61.1 NC_001798.1 + 90 0.69 0.471878
Target:  5'- gGCGgcaGGGCAgCCCCGCgCGCCc---- -3'
miRNA:   3'- gCGCg--CCCGUgGGGGCG-GUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 150 0.7 0.410193
Target:  5'- -cCGCGGGCGccgccccucCCCCCGCgCGCCGc--- -3'
miRNA:   3'- gcGCGCCCGU---------GGGGGCG-GUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 194 0.73 0.28964
Target:  5'- -cCGCGGGCGCCCCCGCgCGgCu---- -3'
miRNA:   3'- gcGCGCCCGUGGGGGCG-GUgGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 440 0.66 0.676601
Target:  5'- gCGCGCcacgGGGCugCgguCCCGCgGCCGc--- -3'
miRNA:   3'- -GCGCG----CCCGugG---GGGCGgUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 491 0.68 0.518678
Target:  5'- cCGCGCcccgccccggGGGCuuCCCCCGCC-CCu---- -3'
miRNA:   3'- -GCGCG----------CCCGu-GGGGGCGGuGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 662 0.67 0.61681
Target:  5'- gGCGCGGGagacguGCCgCCCGCCcgACCc---- -3'
miRNA:   3'- gCGCGCCCg-----UGG-GGGCGG--UGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 1478 0.68 0.528265
Target:  5'- gCGCGcCGGGCGCCauggcgucgCCCGCgC-CCGAGGc -3'
miRNA:   3'- -GCGC-GCCCGUGG---------GGGCG-GuGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 1731 0.71 0.401796
Target:  5'- gGUGCGGcGCAggUCCCgCGCCGCCGGc-- -3'
miRNA:   3'- gCGCGCC-CGU--GGGG-GCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 2611 0.67 0.577067
Target:  5'- gGCGCgGGGCGCCgCCCGgCggcgcccugGCCGGGGc -3'
miRNA:   3'- gCGCG-CCCGUGG-GGGCgG---------UGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 2811 0.71 0.385333
Target:  5'- aGCGcCGGGCccaggGCCCCgGCgACCAGGc- -3'
miRNA:   3'- gCGC-GCCCG-----UGGGGgCGgUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 3018 0.68 0.546654
Target:  5'- gCGCgGCGGGCcgggcuccggccaGCCCCggcacgGCCGCCAGGu- -3'
miRNA:   3'- -GCG-CGCCCG-------------UGGGGg-----CGGUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 3141 0.68 0.567209
Target:  5'- cCGCGCGccgGCCgCCGCCACCAc--- -3'
miRNA:   3'- -GCGCGCccgUGGgGGCGGUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 3239 0.7 0.418699
Target:  5'- aGgGCGGcgaGCACCCCCGCggCGCCGu--- -3'
miRNA:   3'- gCgCGCC---CGUGGGGGCG--GUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 3279 0.66 0.646756
Target:  5'- cCGCGCGcucgucggccGGCGaCgCCGCCGCCGAc-- -3'
miRNA:   3'- -GCGCGC----------CCGUgGgGGCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 3677 0.69 0.509162
Target:  5'- aCGCGCGGGUucuggagccACCCCauCGCCuCCGc--- -3'
miRNA:   3'- -GCGCGCCCG---------UGGGG--GCGGuGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 3817 0.66 0.676601
Target:  5'- cCGCGCcuccuccgccucGGGCGCCCCC-CagagGCCGGGGc -3'
miRNA:   3'- -GCGCG------------CCCGUGGGGGcGg---UGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 4154 0.82 0.067864
Target:  5'- -uCGCGGGCACCCCCGCCuccucgucguccgcGCCGAGGGu -3'
miRNA:   3'- gcGCGCCCGUGGGGGCGG--------------UGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 5453 0.7 0.436026
Target:  5'- gGCGCGGGCgGCUUCCGCUuCCGc--- -3'
miRNA:   3'- gCGCGCCCG-UGGGGGCGGuGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 5502 0.71 0.377271
Target:  5'- gCGgGCGGGCucgcuCCCCUGCCcuuCCGGGu- -3'
miRNA:   3'- -GCgCGCCCGu----GGGGGCGGu--GGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 5556 0.67 0.61681
Target:  5'- cCGCGCucccGUugGCCCCCGCCGgccCCAAAGGg -3'
miRNA:   3'- -GCGCGcc--CG--UGGGGGCGGU---GGUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.