miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 5' -58 NC_001798.1 + 46645 0.78 0.224376
Target:  5'- aGCCCGAgucGACGAgACCGAGCaucacguggggcccgGGGCCGg -3'
miRNA:   3'- aUGGGCU---CUGCUaUGGCUCG---------------UCCGGC- -5'
5429 5' -58 NC_001798.1 + 30766 0.78 0.24456
Target:  5'- aGgCCGAGGCG--GCCGuGCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUGCuaUGGCuCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 5907 0.76 0.294116
Target:  5'- -cCCCGAGGCGGgcCCGgacggggGGCGGGCCGu -3'
miRNA:   3'- auGGGCUCUGCUauGGC-------UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 28620 0.74 0.375594
Target:  5'- gGCCCGAcGGgGGUccugggcGCgCGAGCGGGCCGa -3'
miRNA:   3'- aUGGGCU-CUgCUA-------UG-GCUCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 2224 0.74 0.376402
Target:  5'- gGCCCGAGGCG----CGcAGCGGGCCGa -3'
miRNA:   3'- aUGGGCUCUGCuaugGC-UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 23830 0.74 0.384537
Target:  5'- -cCCCGGGGCGcGUGCUGuacGGCGGGCUGg -3'
miRNA:   3'- auGGGCUCUGC-UAUGGC---UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 122075 0.74 0.392787
Target:  5'- gACgCgGAGGCGGUGCUG-GCGGGCCu -3'
miRNA:   3'- aUG-GgCUCUGCUAUGGCuCGUCCGGc -5'
5429 5' -58 NC_001798.1 + 97478 0.74 0.392787
Target:  5'- gGCCgGcGGCGcgACCGGGgGGGCCGa -3'
miRNA:   3'- aUGGgCuCUGCuaUGGCUCgUCCGGC- -5'
5429 5' -58 NC_001798.1 + 23938 0.73 0.426914
Target:  5'- cGCCCGuGugGGcGCCGAGCuGGgCGa -3'
miRNA:   3'- aUGGGCuCugCUaUGGCUCGuCCgGC- -5'
5429 5' -58 NC_001798.1 + 66826 0.73 0.426914
Target:  5'- aGCCCGGccCGGUGCCGGcGCccAGGCCGg -3'
miRNA:   3'- aUGGGCUcuGCUAUGGCU-CG--UCCGGC- -5'
5429 5' -58 NC_001798.1 + 1505 0.73 0.444624
Target:  5'- cGCCCGAGGCGGcggcccgGCCGucCAGcGCCGg -3'
miRNA:   3'- aUGGGCUCUGCUa------UGGCucGUC-CGGC- -5'
5429 5' -58 NC_001798.1 + 138341 0.72 0.47194
Target:  5'- gACgCGAGGCG--GCCGAGCcGGCCu -3'
miRNA:   3'- aUGgGCUCUGCuaUGGCUCGuCCGGc -5'
5429 5' -58 NC_001798.1 + 146453 0.72 0.481232
Target:  5'- aGCCCGcGGCcgcaGCCGAGCAGcGCCGc -3'
miRNA:   3'- aUGGGCuCUGcua-UGGCUCGUC-CGGC- -5'
5429 5' -58 NC_001798.1 + 19852 0.72 0.490614
Target:  5'- cGCCCGGGGCGGguagGCCaGAGCGuucGGCgGa -3'
miRNA:   3'- aUGGGCUCUGCUa---UGG-CUCGU---CCGgC- -5'
5429 5' -58 NC_001798.1 + 147005 0.72 0.519244
Target:  5'- uUGCCUcgGGGACcc--CCGGGCGGGCCGg -3'
miRNA:   3'- -AUGGG--CUCUGcuauGGCUCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 89195 0.71 0.528936
Target:  5'- gGCCUG-GAUGAUGCUGGGguaCAGGCUGg -3'
miRNA:   3'- aUGGGCuCUGCUAUGGCUC---GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 23887 0.71 0.528936
Target:  5'- cGCCCGAGGCGGaggagGCgCGGGCccgguucgAGGCCu -3'
miRNA:   3'- aUGGGCUCUGCUa----UG-GCUCG--------UCCGGc -5'
5429 5' -58 NC_001798.1 + 60969 0.71 0.528936
Target:  5'- gGCCCgGAGGCGcgGCCGuuugugucGCAGGCgGa -3'
miRNA:   3'- aUGGG-CUCUGCuaUGGCu-------CGUCCGgC- -5'
5429 5' -58 NC_001798.1 + 23573 0.71 0.537714
Target:  5'- gGCCCcgGGGGCGGcgccccgGCCGAGCccgcccaGGGCCGa -3'
miRNA:   3'- aUGGG--CUCUGCUa------UGGCUCG-------UCCGGC- -5'
5429 5' -58 NC_001798.1 + 75865 0.71 0.558385
Target:  5'- uUGCCCGGGGCGAaga-GAuGCGGGUCGa -3'
miRNA:   3'- -AUGGGCUCUGCUauggCU-CGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.