miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 5' -58 NC_001798.1 + 1505 0.73 0.444624
Target:  5'- cGCCCGAGGCGGcggcccgGCCGucCAGcGCCGg -3'
miRNA:   3'- aUGGGCUCUGCUa------UGGCucGUC-CGGC- -5'
5429 5' -58 NC_001798.1 + 1812 0.67 0.756958
Target:  5'- cUGCCgCGAGAccaCGGgcCCGucGGCGGGCCa -3'
miRNA:   3'- -AUGG-GCUCU---GCUauGGC--UCGUCCGGc -5'
5429 5' -58 NC_001798.1 + 2004 0.71 0.578274
Target:  5'- uUGCCCGcccAGGCG--GCCGuGGCGGGCCc -3'
miRNA:   3'- -AUGGGC---UCUGCuaUGGC-UCGUCCGGc -5'
5429 5' -58 NC_001798.1 + 2224 0.74 0.376402
Target:  5'- gGCCCGAGGCG----CGcAGCGGGCCGa -3'
miRNA:   3'- aUGGGCUCUGCuaugGC-UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 2461 0.67 0.775589
Target:  5'- cGCCCugcGGGuCGggGCCcucGGCGGGCCGg -3'
miRNA:   3'- aUGGG---CUCuGCuaUGGc--UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 3004 0.69 0.658779
Target:  5'- -cCCCGGGcGCGggGgCGcGGCGGGCCGg -3'
miRNA:   3'- auGGGCUC-UGCuaUgGC-UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 3627 0.71 0.568308
Target:  5'- cGCCCGAGAU----CCGgaAGCAGGCCu -3'
miRNA:   3'- aUGGGCUCUGcuauGGC--UCGUCCGGc -5'
5429 5' -58 NC_001798.1 + 3887 0.68 0.747477
Target:  5'- cGCCCcgGGGGCGGgggGCCGGcccCGGGCCa -3'
miRNA:   3'- aUGGG--CUCUGCUa--UGGCUc--GUCCGGc -5'
5429 5' -58 NC_001798.1 + 4019 0.69 0.648708
Target:  5'- gGCCCGuGGCGucgcgGCCGGccaccgccgcGCGGGCCc -3'
miRNA:   3'- aUGGGCuCUGCua---UGGCU----------CGUCCGGc -5'
5429 5' -58 NC_001798.1 + 4097 0.69 0.66883
Target:  5'- gGgCCGGGGCGGgcucgGCCcuGGGCGGGCuCGg -3'
miRNA:   3'- aUgGGCUCUGCUa----UGG--CUCGUCCG-GC- -5'
5429 5' -58 NC_001798.1 + 4582 0.67 0.793722
Target:  5'- -gUCCGcGGCGGagaaGgCGAGCGGGCCGc -3'
miRNA:   3'- auGGGCuCUGCUa---UgGCUCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 4695 0.7 0.598313
Target:  5'- cUGCCgcggCGAGACGAcGCCGuccgcGGCAGGCuCGu -3'
miRNA:   3'- -AUGG----GCUCUGCUaUGGC-----UCGUCCG-GC- -5'
5429 5' -58 NC_001798.1 + 5907 0.76 0.294116
Target:  5'- -cCCCGAGGCGGgcCCGgacggggGGCGGGCCGu -3'
miRNA:   3'- auGGGCUCUGCUauGGC-------UCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6267 0.67 0.784722
Target:  5'- gGgCCGGGGgGAcggGCCGGGgggaCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUgCUa--UGGCUC----GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6306 0.67 0.784722
Target:  5'- gGgCCGGGGgGAcggGCCGGGgggaCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUgCUa--UGGCUC----GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6345 0.67 0.784722
Target:  5'- gGgCCGGGGgGAcggGCCGGGgggaCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUgCUa--UGGCUC----GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6380 0.66 0.828223
Target:  5'- gGCCgGGGGgcCGGgggGCCGGG-GGGCCGg -3'
miRNA:   3'- aUGGgCUCU--GCUa--UGGCUCgUCCGGC- -5'
5429 5' -58 NC_001798.1 + 19852 0.72 0.490614
Target:  5'- cGCCCGGGGCGGguagGCCaGAGCGuucGGCgGa -3'
miRNA:   3'- aUGGGCUCUGCUa---UGG-CUCGU---CCGgC- -5'
5429 5' -58 NC_001798.1 + 21823 0.67 0.784722
Target:  5'- aGCCCGcgGGAUGAcgcgggccCCGGGCAGGgCGc -3'
miRNA:   3'- aUGGGC--UCUGCUau------GGCUCGUCCgGC- -5'
5429 5' -58 NC_001798.1 + 22263 0.67 0.793722
Target:  5'- cGCCCGcgccGGGCgcuaaugaGAUGCCGcGCGGGCgGa -3'
miRNA:   3'- aUGGGC----UCUG--------CUAUGGCuCGUCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.