miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5433 3' -56.9 NC_001798.1 + 4211 0.66 0.900426
Target:  5'- cUGcGGcGCUggCGGGGGCgcgGGCGG-CGu -3'
miRNA:   3'- -AC-CCaCGAa-GCCCCUGaa-CUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 150836 0.66 0.900426
Target:  5'- cGGG-GCgccaGGGGGCgc--CGGUCGg -3'
miRNA:   3'- aCCCaCGaag-CCCCUGaacuGCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 106053 0.66 0.896603
Target:  5'- cGGGUcacGUgUCGGGGAggggggccuuugcggUcUGGCGGUCGc -3'
miRNA:   3'- aCCCA---CGaAGCCCCU---------------GaACUGCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 69283 0.66 0.894009
Target:  5'- cGGGUcaggugauaGCg--GGGGGCgccgggGACGGUCa -3'
miRNA:   3'- aCCCA---------CGaagCCCCUGaa----CUGCCAGc -5'
5433 3' -56.9 NC_001798.1 + 56189 0.66 0.88737
Target:  5'- gGGGUGgggUGGGGugUgGugGGUaCGg -3'
miRNA:   3'- aCCCACgaaGCCCCugAaCugCCA-GC- -5'
5433 3' -56.9 NC_001798.1 + 43963 0.66 0.880511
Target:  5'- aGGGUGU--CGGGGc---GugGGUCGu -3'
miRNA:   3'- aCCCACGaaGCCCCugaaCugCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 12710 0.66 0.866152
Target:  5'- cUGGGgGCggCGGGGGCgUGguGCGGcgCGa -3'
miRNA:   3'- -ACCCaCGaaGCCCCUGaAC--UGCCa-GC- -5'
5433 3' -56.9 NC_001798.1 + 122818 0.67 0.850975
Target:  5'- cUGGGcggccaggGCggUCGGGGGCggcGGCGG-CGg -3'
miRNA:   3'- -ACCCa-------CGa-AGCCCCUGaa-CUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 111659 0.67 0.850975
Target:  5'- cGGGgggGCggaagagacgcUCGGGGACacaacACGGUCGa -3'
miRNA:   3'- aCCCa--CGa----------AGCCCCUGaac--UGCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 64148 0.67 0.850975
Target:  5'- -cGGUGCUcgCGGGGGa--GACGG-CGg -3'
miRNA:   3'- acCCACGAa-GCCCCUgaaCUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 154380 0.67 0.843094
Target:  5'- gGGGUGUUUUuuggggGGGGGCgcgaaGGCGGgCGg -3'
miRNA:   3'- aCCCACGAAG------CCCCUGaa---CUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 105691 0.67 0.843094
Target:  5'- aGGGagagGCgacagaCGGGGGCgacaGCGGUCGa -3'
miRNA:   3'- aCCCa---CGaa----GCCCCUGaac-UGCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 42 0.67 0.843094
Target:  5'- gGGGUGUUUUuuggggGGGGGCgcgaaGGCGGgCGg -3'
miRNA:   3'- aCCCACGAAG------CCCCUGaa---CUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 36506 0.67 0.835026
Target:  5'- cGGGcgGCcgggCGGGGGCgcgcGGCGGcCGg -3'
miRNA:   3'- aCCCa-CGaa--GCCCCUGaa--CUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 154116 0.67 0.826778
Target:  5'- cGGGgaccccgGCggCGGGGACcccGGCGG-CGg -3'
miRNA:   3'- aCCCa------CGaaGCCCCUGaa-CUGCCaGC- -5'
5433 3' -56.9 NC_001798.1 + 29909 0.67 0.823431
Target:  5'- gGGGUGgUcgcgggcggugggcUCGGGGgcgggacGCUUGACGGggcCGa -3'
miRNA:   3'- aCCCACgA--------------AGCCCC-------UGAACUGCCa--GC- -5'
5433 3' -56.9 NC_001798.1 + 63251 0.68 0.801033
Target:  5'- aGGGgaaaGCUggcgUCGGGGGCgggGGCGGa-- -3'
miRNA:   3'- aCCCa---CGA----AGCCCCUGaa-CUGCCagc -5'
5433 3' -56.9 NC_001798.1 + 100739 0.68 0.792143
Target:  5'- aGGGga--UgGGGGACUUGgggcgcGCGGUCGg -3'
miRNA:   3'- aCCCacgaAgCCCCUGAAC------UGCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 14321 0.7 0.706855
Target:  5'- gGGGUGCgUgGGGaGGCgu-GCGGUCGc -3'
miRNA:   3'- aCCCACGaAgCCC-CUGaacUGCCAGC- -5'
5433 3' -56.9 NC_001798.1 + 33492 0.7 0.677
Target:  5'- gGGGgaaaGUggggCGGGGGCgagGGCGGUUGa -3'
miRNA:   3'- aCCCa---CGaa--GCCCCUGaa-CUGCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.