miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 3' -57 NC_001798.1 + 57724 0.74 0.471919
Target:  5'- cCCGG-CCCCCgcgaAGGACcggugggCGCGCCCGGc -3'
miRNA:   3'- -GGUCaGGGGGa---UCUUGa------GUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 62476 0.71 0.617899
Target:  5'- cCCGGUCgUCCUccucGGAgauACUCAcccCGCCCGAg -3'
miRNA:   3'- -GGUCAGgGGGA----UCU---UGAGU---GCGGGCU- -5'
5435 3' -57 NC_001798.1 + 70716 0.71 0.627949
Target:  5'- cCCGGUUCCCCUGGGGCaacccgGCGCCa-- -3'
miRNA:   3'- -GGUCAGGGGGAUCUUGag----UGCGGgcu -5'
5435 3' -57 NC_001798.1 + 110962 0.7 0.674105
Target:  5'- --cGUCCCCCacggucaggaccaGGGACgUCACGCCCGu -3'
miRNA:   3'- gguCAGGGGGa------------UCUUG-AGUGCGGGCu -5'
5435 3' -57 NC_001798.1 + 128065 0.7 0.688049
Target:  5'- cCCGGUCCCCC--GGAC-CcCGaCCCGAu -3'
miRNA:   3'- -GGUCAGGGGGauCUUGaGuGC-GGGCU- -5'
5435 3' -57 NC_001798.1 + 152255 0.7 0.697957
Target:  5'- -gGGUCCgCCCgGGAGCUCGUGCCgGGc -3'
miRNA:   3'- ggUCAGG-GGGaUCUUGAGUGCGGgCU- -5'
5435 3' -57 NC_001798.1 + 83841 0.7 0.707812
Target:  5'- gCCGGUCCCCgUccGGGcgGCgcuggCGgGCCCGAg -3'
miRNA:   3'- -GGUCAGGGGgA--UCU--UGa----GUgCGGGCU- -5'
5435 3' -57 NC_001798.1 + 88358 0.69 0.727327
Target:  5'- gCAGUCCCUCgggcAGGGgUCGCGCCa-- -3'
miRNA:   3'- gGUCAGGGGGa---UCUUgAGUGCGGgcu -5'
5435 3' -57 NC_001798.1 + 123398 0.69 0.727327
Target:  5'- gCCAGgCCCCCcgGGAGC-CGCgGCCCc- -3'
miRNA:   3'- -GGUCaGGGGGa-UCUUGaGUG-CGGGcu -5'
5435 3' -57 NC_001798.1 + 127118 0.69 0.746525
Target:  5'- uCgAGUCCCCCcgGGggUUUgggAUGCCCGc -3'
miRNA:   3'- -GgUCAGGGGGa-UCuuGAG---UGCGGGCu -5'
5435 3' -57 NC_001798.1 + 89302 0.69 0.746525
Target:  5'- gCCGG-CCCCCggu--CUCGCGCgCGAc -3'
miRNA:   3'- -GGUCaGGGGGaucuuGAGUGCGgGCU- -5'
5435 3' -57 NC_001798.1 + 34566 0.69 0.746525
Target:  5'- -gGGUCCCCCggcGGAcgGCUCACGCggcgCGGc -3'
miRNA:   3'- ggUCAGGGGGa--UCU--UGAGUGCGg---GCU- -5'
5435 3' -57 NC_001798.1 + 74556 0.69 0.746525
Target:  5'- -uGGUCCCCaggggGGAcggagaagGCUCGgGCCCGGu -3'
miRNA:   3'- ggUCAGGGGga---UCU--------UGAGUgCGGGCU- -5'
5435 3' -57 NC_001798.1 + 92527 0.68 0.7873
Target:  5'- cCCAGgCCCCCaaccugacgcggcucUGcGAGCgggCGCGCCCGc -3'
miRNA:   3'- -GGUCaGGGGG---------------AU-CUUGa--GUGCGGGCu -5'
5435 3' -57 NC_001798.1 + 112115 0.68 0.792674
Target:  5'- aUCAcGUCUCgCUcGGAGCUCACGUUCGGg -3'
miRNA:   3'- -GGU-CAGGGgGA-UCUUGAGUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 118809 0.68 0.810215
Target:  5'- gCCuGcCCCguggaCCUGGGGCUCACGCacgCCGGc -3'
miRNA:   3'- -GGuCaGGG-----GGAUCUUGAGUGCG---GGCU- -5'
5435 3' -57 NC_001798.1 + 40042 0.68 0.818755
Target:  5'- uCCAgagcGUCCUCCUcGAGCUCGCuGUCgGAc -3'
miRNA:   3'- -GGU----CAGGGGGAuCUUGAGUG-CGGgCU- -5'
5435 3' -57 NC_001798.1 + 135288 0.68 0.818755
Target:  5'- gCGGccgCCCCCUcGGAGCcCugGgCCCGGg -3'
miRNA:   3'- gGUCa--GGGGGA-UCUUGaGugC-GGGCU- -5'
5435 3' -57 NC_001798.1 + 30439 0.67 0.823802
Target:  5'- cCCGG-CCCCCggccGAGCgccagggcagcccCACGCCCGc -3'
miRNA:   3'- -GGUCaGGGGGau--CUUGa------------GUGCGGGCu -5'
5435 3' -57 NC_001798.1 + 51150 0.67 0.827132
Target:  5'- gCGGUCaCCCCgGGucccGACgCGCGUCCGAg -3'
miRNA:   3'- gGUCAG-GGGGaUC----UUGaGUGCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.