miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 3' -57 NC_001798.1 + 7497 0.66 0.879211
Target:  5'- cCCGGUCCCCUacgcccccCUCGgcaGCCCGGa -3'
miRNA:   3'- -GGUCAGGGGGaucuu---GAGUg--CGGGCU- -5'
5435 3' -57 NC_001798.1 + 9485 0.66 0.894041
Target:  5'- uCCAGUCCgCgUAcAGCUCGCuGUCCGc -3'
miRNA:   3'- -GGUCAGGgGgAUcUUGAGUG-CGGGCu -5'
5435 3' -57 NC_001798.1 + 19813 0.67 0.856584
Target:  5'- aCCcGUCCUcgcguUCUGGGGCUuccguugcgcgacaCGCGCCCGGg -3'
miRNA:   3'- -GGuCAGGG-----GGAUCUUGA--------------GUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 30439 0.67 0.823802
Target:  5'- cCCGG-CCCCCggccGAGCgccagggcagcccCACGCCCGc -3'
miRNA:   3'- -GGUCaGGGGGau--CUUGa------------GUGCGGGCu -5'
5435 3' -57 NC_001798.1 + 34566 0.69 0.746525
Target:  5'- -gGGUCCCCCggcGGAcgGCUCACGCggcgCGGc -3'
miRNA:   3'- ggUCAGGGGGa--UCU--UGAGUGCGg---GCU- -5'
5435 3' -57 NC_001798.1 + 40042 0.68 0.818755
Target:  5'- uCCAgagcGUCCUCCUcGAGCUCGCuGUCgGAc -3'
miRNA:   3'- -GGU----CAGGGGGAuCUUGAGUG-CGGgCU- -5'
5435 3' -57 NC_001798.1 + 51150 0.67 0.827132
Target:  5'- gCGGUCaCCCCgGGucccGACgCGCGUCCGAg -3'
miRNA:   3'- gGUCAG-GGGGaUC----UUGaGUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 57131 0.66 0.890101
Target:  5'- cCCAGcggCCCgacgaccgaguacagCCgcGGGCUgGCGCCCGGg -3'
miRNA:   3'- -GGUCa--GGG---------------GGauCUUGAgUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 57724 0.74 0.471919
Target:  5'- cCCGG-CCCCCgcgaAGGACcggugggCGCGCCCGGc -3'
miRNA:   3'- -GGUCaGGGGGa---UCUUGa------GUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 61877 0.67 0.866312
Target:  5'- cCCGGcggCCCCCUcGGGC--GCGCCCu- -3'
miRNA:   3'- -GGUCa--GGGGGAuCUUGagUGCGGGcu -5'
5435 3' -57 NC_001798.1 + 62476 0.71 0.617899
Target:  5'- cCCGGUCgUCCUccucGGAgauACUCAcccCGCCCGAg -3'
miRNA:   3'- -GGUCAGgGGGA----UCU---UGAGU---GCGGGCU- -5'
5435 3' -57 NC_001798.1 + 68700 0.67 0.835338
Target:  5'- cCCAGgggCCCCCcAGGcacaGCUCGgCGUCCa- -3'
miRNA:   3'- -GGUCa--GGGGGaUCU----UGAGU-GCGGGcu -5'
5435 3' -57 NC_001798.1 + 70716 0.71 0.627949
Target:  5'- cCCGGUUCCCCUGGGGCaacccgGCGCCa-- -3'
miRNA:   3'- -GGUCAGGGGGAUCUUGag----UGCGGgcu -5'
5435 3' -57 NC_001798.1 + 74556 0.69 0.746525
Target:  5'- -uGGUCCCCaggggGGAcggagaagGCUCGgGCCCGGu -3'
miRNA:   3'- ggUCAGGGGga---UCU--------UGAGUgCGGGCU- -5'
5435 3' -57 NC_001798.1 + 74640 0.67 0.857344
Target:  5'- aCCGGcCCCCCgaggccccccggGGGGcCUCGgGCCCa- -3'
miRNA:   3'- -GGUCaGGGGGa-----------UCUU-GAGUgCGGGcu -5'
5435 3' -57 NC_001798.1 + 78987 0.66 0.880603
Target:  5'- -aAGUCCCCCgaGGggUUCcGCGCCa-- -3'
miRNA:   3'- ggUCAGGGGGa-UCuuGAG-UGCGGgcu -5'
5435 3' -57 NC_001798.1 + 81950 0.66 0.90043
Target:  5'- uCCcG-CCCCCac--GCUCGCGCCCa- -3'
miRNA:   3'- -GGuCaGGGGGaucuUGAGUGCGGGcu -5'
5435 3' -57 NC_001798.1 + 82248 0.66 0.880603
Target:  5'- aCCAGcCCCCCgc---CUUugGCCCc- -3'
miRNA:   3'- -GGUCaGGGGGaucuuGAGugCGGGcu -5'
5435 3' -57 NC_001798.1 + 83841 0.7 0.707812
Target:  5'- gCCGGUCCCCgUccGGGcgGCgcuggCGgGCCCGAg -3'
miRNA:   3'- -GGUCAGGGGgA--UCU--UGa----GUgCGGGCU- -5'
5435 3' -57 NC_001798.1 + 87322 0.66 0.894041
Target:  5'- uCCAGgaCCUCCUGGccgauacGCUCGgccaGCCCGAg -3'
miRNA:   3'- -GGUCa-GGGGGAUCu------UGAGUg---CGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.