Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5435 | 3' | -57 | NC_001798.1 | + | 88358 | 0.69 | 0.727327 |
Target: 5'- gCAGUCCCUCgggcAGGGgUCGCGCCa-- -3' miRNA: 3'- gGUCAGGGGGa---UCUUgAGUGCGGgcu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 89302 | 0.69 | 0.746525 |
Target: 5'- gCCGG-CCCCCggu--CUCGCGCgCGAc -3' miRNA: 3'- -GGUCaGGGGGaucuuGAGUGCGgGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 92527 | 0.68 | 0.7873 |
Target: 5'- cCCAGgCCCCCaaccugacgcggcucUGcGAGCgggCGCGCCCGc -3' miRNA: 3'- -GGUCaGGGGG---------------AU-CUUGa--GUGCGGGCu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 100559 | 0.66 | 0.872846 |
Target: 5'- aCCAcgaguuuGUgCCCCUGGAGgUCuacacGCGCCaCGAg -3' miRNA: 3'- -GGU-------CAgGGGGAUCUUgAG-----UGCGG-GCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 107631 | 0.66 | 0.873561 |
Target: 5'- aUCAGUCgCCCgucGGGugUCgagACGCCCu- -3' miRNA: 3'- -GGUCAGgGGGa--UCUugAG---UGCGGGcu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 108571 | 0.66 | 0.880603 |
Target: 5'- gCGGUCCCgggCCUGGGuaacAUUCGCGgCCGc -3' miRNA: 3'- gGUCAGGG---GGAUCU----UGAGUGCgGGCu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 110962 | 0.7 | 0.674105 |
Target: 5'- --cGUCCCCCacggucaggaccaGGGACgUCACGCCCGu -3' miRNA: 3'- gguCAGGGGGa------------UCUUG-AGUGCGGGCu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 112115 | 0.68 | 0.792674 |
Target: 5'- aUCAcGUCUCgCUcGGAGCUCACGUUCGGg -3' miRNA: 3'- -GGU-CAGGGgGA-UCUUGAGUGCGGGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 118588 | 0.67 | 0.858859 |
Target: 5'- gCGaUCCCCUcGGGuauCUCGCGcCCCGAu -3' miRNA: 3'- gGUcAGGGGGaUCUu--GAGUGC-GGGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 118809 | 0.68 | 0.810215 |
Target: 5'- gCCuGcCCCguggaCCUGGGGCUCACGCacgCCGGc -3' miRNA: 3'- -GGuCaGGG-----GGAUCUUGAGUGCG---GGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 121825 | 0.67 | 0.844158 |
Target: 5'- cCCAGaCCCCCccaucuccccggaggAGcAGCUCACGgcCCCGGg -3' miRNA: 3'- -GGUCaGGGGGa--------------UC-UUGAGUGC--GGGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 123398 | 0.69 | 0.727327 |
Target: 5'- gCCAGgCCCCCcgGGAGC-CGCgGCCCc- -3' miRNA: 3'- -GGUCaGGGGGa-UCUUGaGUG-CGGGcu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 123433 | 0.66 | 0.873561 |
Target: 5'- aCCGGggcgCCCCCcccGACgcgCGCGCCCc- -3' miRNA: 3'- -GGUCa---GGGGGaucUUGa--GUGCGGGcu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 127118 | 0.69 | 0.746525 |
Target: 5'- uCgAGUCCCCCcgGGggUUUgggAUGCCCGc -3' miRNA: 3'- -GgUCAGGGGGa-UCuuGAG---UGCGGGCu -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 128065 | 0.7 | 0.688049 |
Target: 5'- cCCGGUCCCCC--GGAC-CcCGaCCCGAu -3' miRNA: 3'- -GGUCAGGGGGauCUUGaGuGC-GGGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 135288 | 0.68 | 0.818755 |
Target: 5'- gCGGccgCCCCCUcGGAGCcCugGgCCCGGg -3' miRNA: 3'- gGUCa--GGGGGA-UCUUGaGugC-GGGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 137433 | 0.66 | 0.880603 |
Target: 5'- aCCGGgaccCgCCCCgcgGGGACgcgCuCGCCCGGa -3' miRNA: 3'- -GGUCa---G-GGGGa--UCUUGa--GuGCGGGCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 152255 | 0.7 | 0.697957 |
Target: 5'- -gGGUCCgCCCgGGAGCUCGUGCCgGGc -3' miRNA: 3'- ggUCAGG-GGGaUCUUGAGUGCGGgCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 153057 | 0.66 | 0.898537 |
Target: 5'- gCCGGcgccgCCCCCUGGGGCgggCggagcggcggggcgGCGCCgGGc -3' miRNA: 3'- -GGUCa----GGGGGAUCUUGa--G--------------UGCGGgCU- -5' |
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5435 | 3' | -57 | NC_001798.1 | + | 153203 | 0.66 | 0.90043 |
Target: 5'- gCCGGUUCaaCCCUAGA---C-CGCCCGAc -3' miRNA: 3'- -GGUCAGG--GGGAUCUugaGuGCGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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