miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 3' -57 NC_001798.1 + 154238 0.66 0.880603
Target:  5'- gCCAGUCCgugcuugCCUAgcGAACUCACccguCCCGGc -3'
miRNA:   3'- -GGUCAGGg------GGAU--CUUGAGUGc---GGGCU- -5'
5435 3' -57 NC_001798.1 + 153203 0.66 0.90043
Target:  5'- gCCGGUUCaaCCCUAGA---C-CGCCCGAc -3'
miRNA:   3'- -GGUCAGG--GGGAUCUugaGuGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 153057 0.66 0.898537
Target:  5'- gCCGGcgccgCCCCCUGGGGCgggCggagcggcggggcgGCGCCgGGc -3'
miRNA:   3'- -GGUCa----GGGGGAUCUUGa--G--------------UGCGGgCU- -5'
5435 3' -57 NC_001798.1 + 152255 0.7 0.697957
Target:  5'- -gGGUCCgCCCgGGAGCUCGUGCCgGGc -3'
miRNA:   3'- ggUCAGG-GGGaUCUUGAGUGCGGgCU- -5'
5435 3' -57 NC_001798.1 + 137433 0.66 0.880603
Target:  5'- aCCGGgaccCgCCCCgcgGGGACgcgCuCGCCCGGa -3'
miRNA:   3'- -GGUCa---G-GGGGa--UCUUGa--GuGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 135288 0.68 0.818755
Target:  5'- gCGGccgCCCCCUcGGAGCcCugGgCCCGGg -3'
miRNA:   3'- gGUCa--GGGGGA-UCUUGaGugC-GGGCU- -5'
5435 3' -57 NC_001798.1 + 128065 0.7 0.688049
Target:  5'- cCCGGUCCCCC--GGAC-CcCGaCCCGAu -3'
miRNA:   3'- -GGUCAGGGGGauCUUGaGuGC-GGGCU- -5'
5435 3' -57 NC_001798.1 + 127118 0.69 0.746525
Target:  5'- uCgAGUCCCCCcgGGggUUUgggAUGCCCGc -3'
miRNA:   3'- -GgUCAGGGGGa-UCuuGAG---UGCGGGCu -5'
5435 3' -57 NC_001798.1 + 123433 0.66 0.873561
Target:  5'- aCCGGggcgCCCCCcccGACgcgCGCGCCCc- -3'
miRNA:   3'- -GGUCa---GGGGGaucUUGa--GUGCGGGcu -5'
5435 3' -57 NC_001798.1 + 123398 0.69 0.727327
Target:  5'- gCCAGgCCCCCcgGGAGC-CGCgGCCCc- -3'
miRNA:   3'- -GGUCaGGGGGa-UCUUGaGUG-CGGGcu -5'
5435 3' -57 NC_001798.1 + 121825 0.67 0.844158
Target:  5'- cCCAGaCCCCCccaucuccccggaggAGcAGCUCACGgcCCCGGg -3'
miRNA:   3'- -GGUCaGGGGGa--------------UC-UUGAGUGC--GGGCU- -5'
5435 3' -57 NC_001798.1 + 118809 0.68 0.810215
Target:  5'- gCCuGcCCCguggaCCUGGGGCUCACGCacgCCGGc -3'
miRNA:   3'- -GGuCaGGG-----GGAUCUUGAGUGCG---GGCU- -5'
5435 3' -57 NC_001798.1 + 118588 0.67 0.858859
Target:  5'- gCGaUCCCCUcGGGuauCUCGCGcCCCGAu -3'
miRNA:   3'- gGUcAGGGGGaUCUu--GAGUGC-GGGCU- -5'
5435 3' -57 NC_001798.1 + 112115 0.68 0.792674
Target:  5'- aUCAcGUCUCgCUcGGAGCUCACGUUCGGg -3'
miRNA:   3'- -GGU-CAGGGgGA-UCUUGAGUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 110962 0.7 0.674105
Target:  5'- --cGUCCCCCacggucaggaccaGGGACgUCACGCCCGu -3'
miRNA:   3'- gguCAGGGGGa------------UCUUG-AGUGCGGGCu -5'
5435 3' -57 NC_001798.1 + 108571 0.66 0.880603
Target:  5'- gCGGUCCCgggCCUGGGuaacAUUCGCGgCCGc -3'
miRNA:   3'- gGUCAGGG---GGAUCU----UGAGUGCgGGCu -5'
5435 3' -57 NC_001798.1 + 107631 0.66 0.873561
Target:  5'- aUCAGUCgCCCgucGGGugUCgagACGCCCu- -3'
miRNA:   3'- -GGUCAGgGGGa--UCUugAG---UGCGGGcu -5'
5435 3' -57 NC_001798.1 + 100559 0.66 0.872846
Target:  5'- aCCAcgaguuuGUgCCCCUGGAGgUCuacacGCGCCaCGAg -3'
miRNA:   3'- -GGU-------CAgGGGGAUCUUgAG-----UGCGG-GCU- -5'
5435 3' -57 NC_001798.1 + 92527 0.68 0.7873
Target:  5'- cCCAGgCCCCCaaccugacgcggcucUGcGAGCgggCGCGCCCGc -3'
miRNA:   3'- -GGUCaGGGGG---------------AU-CUUGa--GUGCGGGCu -5'
5435 3' -57 NC_001798.1 + 89302 0.69 0.746525
Target:  5'- gCCGG-CCCCCggu--CUCGCGCgCGAc -3'
miRNA:   3'- -GGUCaGGGGGaucuuGAGUGCGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.