miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 6577 0.67 0.688816
Target:  5'- cGGgGGgacgGGC-CGGggggacgGGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGcGCCaaaga--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6535 0.67 0.688816
Target:  5'- cGGgGGgacgGGC-CGGggggacgGGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGcGCCaaaga--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 146096 0.67 0.688816
Target:  5'- aGGCGGgcgGGCGaaGgaaggGGGGGugGu -3'
miRNA:   3'- -CCGCCa--CCGCgcCaaagaCCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 20348 0.67 0.679091
Target:  5'- aGGCGGuUGGCGCugccGGgcgggUUC-GGGGcGGCa -3'
miRNA:   3'- -CCGCC-ACCGCG----CCa----AAGaCCCC-CUGc -5'
5435 5' -60.3 NC_001798.1 + 43527 0.67 0.678116
Target:  5'- cGGCGGccGCgucucccgccaggGCGGUUUCccugGGGGuGACGu -3'
miRNA:   3'- -CCGCCacCG-------------CGCCAAAGa---CCCC-CUGC- -5'
5435 5' -60.3 NC_001798.1 + 147609 0.67 0.66933
Target:  5'- aGGCGGcGGgGagaGGggg--GGGGGGCGg -3'
miRNA:   3'- -CCGCCaCCgCg--CCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 15110 0.67 0.66933
Target:  5'- aGGcCGGUGGCGCuGUcgUCguccucGGGGGGu- -3'
miRNA:   3'- -CC-GCCACCGCGcCAa-AGa-----CCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 102033 0.67 0.66933
Target:  5'- gGGUGGUugGGCGgGGgucUCcgugucugcgUGGGGGugGu -3'
miRNA:   3'- -CCGCCA--CCGCgCCaa-AG----------ACCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 24127 0.68 0.663459
Target:  5'- cGGCaGcGUGGCGCGGgccgugccccacCUGGGGuACGc -3'
miRNA:   3'- -CCG-C-CACCGCGCCaaa---------GACCCCcUGC- -5'
5435 5' -60.3 NC_001798.1 + 31149 0.68 0.659541
Target:  5'- cGCGGgGGCgGCGGUgc---GGGGGCGa -3'
miRNA:   3'- cCGCCaCCG-CGCCAaagacCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 36599 0.68 0.65758
Target:  5'- gGGCGGgGGCGCGcGgcggccggGcGGGGGCGc -3'
miRNA:   3'- -CCGCCaCCGCGC-Caaaga---C-CCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 36557 0.68 0.65758
Target:  5'- gGGCGGgGGCGCGcGgcggccggGcGGGGGCGc -3'
miRNA:   3'- -CCGCCaCCGCGC-Caaaga---C-CCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 36515 0.68 0.65758
Target:  5'- gGGCGGgGGCGCGcGgcggccggGcGGGGGCGc -3'
miRNA:   3'- -CCGCCaCCGCGC-Caaaga---C-CCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 14991 0.68 0.649732
Target:  5'- gGGCGGgggGGCGaGGcgugUUGGGGG-CGa -3'
miRNA:   3'- -CCGCCa--CCGCgCCaaa-GACCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 2961 0.68 0.63991
Target:  5'- aGGCGG-GGCGCGucggCgugcGGcGGGGCGg -3'
miRNA:   3'- -CCGCCaCCGCGCcaaaGa---CC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 111656 0.68 0.63991
Target:  5'- cGGCGGgGGgGCGGaagagacgCUcGGGGACa -3'
miRNA:   3'- -CCGCCaCCgCGCCaaa-----GAcCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 26968 0.68 0.630083
Target:  5'- gGGCGGgggucgGGCggGCGGgggUC-GGGcGGGCGg -3'
miRNA:   3'- -CCGCCa-----CCG--CGCCaa-AGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 26864 0.68 0.630083
Target:  5'- gGGCGGgggucgGGCggGCGGgggUC-GGGcGGGCGg -3'
miRNA:   3'- -CCGCCa-----CCG--CGCCaa-AGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 26819 0.68 0.630083
Target:  5'- gGGCGGgggucgGGCggGCGGgggUC-GGGcGGGCGg -3'
miRNA:   3'- -CCGCCa-----CCG--CGCCaa-AGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 48609 0.68 0.630083
Target:  5'- gGGCGGgaGGgGCGGgaggggCgGGaGGGGCGg -3'
miRNA:   3'- -CCGCCa-CCgCGCCaaa---GaCC-CCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.