Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5435 | 5' | -60.3 | NC_001798.1 | + | 31340 | 0.66 | 0.745975 |
Target: 5'- cGGCGGggGGCGCGcGcaggcgCggcGGGuGGGCGa -3' miRNA: 3'- -CCGCCa-CCGCGC-Caaa---Ga--CCC-CCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 135449 | 0.66 | 0.745975 |
Target: 5'- cGGCGGcaccggGGCuGCG--UUCUGGGGG-Cu -3' miRNA: 3'- -CCGCCa-----CCG-CGCcaAAGACCCCCuGc -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 150624 | 0.66 | 0.745975 |
Target: 5'- gGGCuccuGGgccGCGCGGggcugUCUcgcGGGGGGCGu -3' miRNA: 3'- -CCG----CCac-CGCGCCaa---AGA---CCCCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 102752 | 0.66 | 0.736631 |
Target: 5'- cGGCGaccugcGGCGCGGgaacgcUCgcggcGGGGGAUGu -3' miRNA: 3'- -CCGCca----CCGCGCCaa----AGa----CCCCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 73640 | 0.66 | 0.736631 |
Target: 5'- aGGCGGUugaugGGCGgGGgggUUC-GGGcGGCGg -3' miRNA: 3'- -CCGCCA-----CCGCgCCa--AAGaCCCcCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 27330 | 0.66 | 0.730984 |
Target: 5'- aGGgGGUGGCGgGGaaccgugugcGGGcGGGCGg -3' miRNA: 3'- -CCgCCACCGCgCCaaaga-----CCC-CCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 11181 | 0.67 | 0.721509 |
Target: 5'- gGGCGGUGGgGCGGgccUgccgaacggcccgcUUggaccuagaccucuUGGGGGGCc -3' miRNA: 3'- -CCGCCACCgCGCCa--A--------------AG--------------ACCCCCUGc -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 96967 | 0.67 | 0.717699 |
Target: 5'- aGGCGcUGGCGCGGaccgCgGcGGGcGGCGg -3' miRNA: 3'- -CCGCcACCGCGCCaaa-GaC-CCC-CUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 48172 | 0.67 | 0.711964 |
Target: 5'- uGGCGGccacgcacgcccggcUGGCgGCGGUacagCUGuGGGACa -3' miRNA: 3'- -CCGCC---------------ACCG-CGCCAaa--GACcCCCUGc -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 150576 | 0.67 | 0.708128 |
Target: 5'- cGCGGggcGGCGCGGagaCggcGGGGGAg- -3' miRNA: 3'- cCGCCa--CCGCGCCaaaGa--CCCCCUgc -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 138562 | 0.67 | 0.708128 |
Target: 5'- aGGCGGUcGC-CGGUccacaggGGGGGGCa -3' miRNA: 3'- -CCGCCAcCGcGCCAaaga---CCCCCUGc -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 6387 | 0.67 | 0.698498 |
Target: 5'- gGGcCGGggGGC-CGGggggCcgGGGGGACGg -3' miRNA: 3'- -CC-GCCa-CCGcGCCaaa-Ga-CCCCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 51807 | 0.67 | 0.698498 |
Target: 5'- uGCgGGUGGCGaucaacgGGUgggUCUGcGGGACGc -3' miRNA: 3'- cCG-CCACCGCg------CCAa--AGACcCCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 102476 | 0.67 | 0.698498 |
Target: 5'- gGGCGGgaggaGGCG-GGUag-UGcGGGGACGg -3' miRNA: 3'- -CCGCCa----CCGCgCCAaagAC-CCCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 74527 | 0.67 | 0.698498 |
Target: 5'- cGGgGGgcucggGGCGCucuuugucGGUguggUCcccagGGGGGACGg -3' miRNA: 3'- -CCgCCa-----CCGCG--------CCAa---AGa----CCCCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 9703 | 0.67 | 0.696565 |
Target: 5'- gGGCGGgugggcucgacgGGCuCGGgcuggcgCUGGGGGAgGu -3' miRNA: 3'- -CCGCCa-----------CCGcGCCaaa----GACCCCCUgC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 9134 | 0.67 | 0.694631 |
Target: 5'- aGGUGGUcugcggcacgcgGGCGCGGcgccgcccgcgCcGGGGGGCa -3' miRNA: 3'- -CCGCCA------------CCGCGCCaaa--------GaCCCCCUGc -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 37549 | 0.67 | 0.692694 |
Target: 5'- gGGUGGUguGGCgggacgugucgucauGCGGUUUUUGGGGuGgucGCGg -3' miRNA: 3'- -CCGCCA--CCG---------------CGCCAAAGACCCC-C---UGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 12717 | 0.67 | 0.692694 |
Target: 5'- cGGCGGgGGCGUGGUgcggcgcgacgucCUGGaucgacGGGAUGu -3' miRNA: 3'- -CCGCCaCCGCGCCAaa-----------GACC------CCCUGC- -5' |
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5435 | 5' | -60.3 | NC_001798.1 | + | 6577 | 0.67 | 0.688816 |
Target: 5'- cGGgGGgacgGGC-CGGggggacgGGGGGACGg -3' miRNA: 3'- -CCgCCa---CCGcGCCaaaga--CCCCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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