miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 91267 0.71 0.441687
Target:  5'- cGGCGGcaaGGCgGCGGUgccgUCUGGGuGGCu -3'
miRNA:   3'- -CCGCCa--CCG-CGCCAa---AGACCCcCUGc -5'
5435 5' -60.3 NC_001798.1 + 150425 0.71 0.442557
Target:  5'- cGGCGGcGGCGCGGgg-CggacuccggacgcgcGGGGcGACGg -3'
miRNA:   3'- -CCGCCaCCGCGCCaaaGa--------------CCCC-CUGC- -5'
5435 5' -60.3 NC_001798.1 + 2577 0.71 0.450428
Target:  5'- gGGCGGggggcguccGCGCGGcucUUCUucGGGGGGCGc -3'
miRNA:   3'- -CCGCCac-------CGCGCCa--AAGA--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 22357 0.71 0.459264
Target:  5'- gGGCGG-GGCcgcgcauaauGCGGUUccacCUGGGGG-CGg -3'
miRNA:   3'- -CCGCCaCCG----------CGCCAAa---GACCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 149170 0.71 0.468191
Target:  5'- cGGcCGGUGGUcCGGU----GGGGGGCGg -3'
miRNA:   3'- -CC-GCCACCGcGCCAaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 4390 0.71 0.468191
Target:  5'- uGGUGGUGGUgGUGGUgUC-GGcGGGGCGc -3'
miRNA:   3'- -CCGCCACCG-CGCCAaAGaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 146038 0.71 0.477206
Target:  5'- cGGUGGggGGCGUGGUggugaacgaUGGGGGGa- -3'
miRNA:   3'- -CCGCCa-CCGCGCCAaag------ACCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 97458 0.71 0.477206
Target:  5'- cGCGuGcUGGCGCGG---CUGGGGGcCGg -3'
miRNA:   3'- cCGC-C-ACCGCGCCaaaGACCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 34621 0.71 0.486306
Target:  5'- gGGCGGcGGCgGCGGgggg-GGGGGGgGg -3'
miRNA:   3'- -CCGCCaCCG-CGCCaaagaCCCCCUgC- -5'
5435 5' -60.3 NC_001798.1 + 36145 0.71 0.486306
Target:  5'- cGGUGG-GGCGCGGcggcggUCggggugGGGGGAg- -3'
miRNA:   3'- -CCGCCaCCGCGCCaa----AGa-----CCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 26924 0.71 0.486306
Target:  5'- gGGCGGgggucgGGCggGCGGggUC-GGGcGGGCGg -3'
miRNA:   3'- -CCGCCa-----CCG--CGCCaaAGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 85256 0.71 0.487221
Target:  5'- cGCGGccGCGCGGggccgcgcgcgaggcUUCgGGGGGGCGg -3'
miRNA:   3'- cCGCCacCGCGCCa--------------AAGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 31255 0.7 0.504748
Target:  5'- uGCGGgcgGGgGUGGgaucugggUCUGGGGG-CGg -3'
miRNA:   3'- cCGCCa--CCgCGCCaa------AGACCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 83561 0.7 0.504748
Target:  5'- cGGCGGUaauggugcuGGgGCGGUgaaaCUGcGGGGCGg -3'
miRNA:   3'- -CCGCCA---------CCgCGCCAaa--GACcCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 36312 0.7 0.504748
Target:  5'- cGGCGG-GGCGCGGgccggGGccGGGGCu -3'
miRNA:   3'- -CCGCCaCCGCGCCaaagaCC--CCCUGc -5'
5435 5' -60.3 NC_001798.1 + 15481 0.7 0.514081
Target:  5'- gGGCGGgggGGuCGUGGgggCugguguggUGGGGGGCGu -3'
miRNA:   3'- -CCGCCa--CC-GCGCCaaaG--------ACCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 29408 0.7 0.527264
Target:  5'- cGGCGG-GGCGcCGGggggaCUcccaucugcgucggcGGGGGGCGg -3'
miRNA:   3'- -CCGCCaCCGC-GCCaaa--GA---------------CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 149398 0.7 0.532953
Target:  5'- cGCGGggGGCGuCGGguagUC-GGGGGGCc -3'
miRNA:   3'- cCGCCa-CCGC-GCCaa--AGaCCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 30949 0.7 0.532953
Target:  5'- gGGCGGggGGCggGCGGgggUCgggcGGGGGuCGg -3'
miRNA:   3'- -CCGCCa-CCG--CGCCaa-AGa---CCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 148037 0.7 0.542481
Target:  5'- cGCGuG-GGCGCGGg--CggGGGGGugGu -3'
miRNA:   3'- cCGC-CaCCGCGCCaaaGa-CCCCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.