miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 9669 0.78 0.194988
Target:  5'- cGCGGagGGCGCGGga--UGGGGGGCu -3'
miRNA:   3'- cCGCCa-CCGCGCCaaagACCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 36425 0.78 0.194988
Target:  5'- gGGCGGUGGgGCGGggUC-GGGGucgcGGCGg -3'
miRNA:   3'- -CCGCCACCgCGCCaaAGaCCCC----CUGC- -5'
5435 5' -60.3 NC_001798.1 + 23849 0.77 0.209427
Target:  5'- cGGCGGgcugGGCGacagccgcccCGGccUCUGGGGGGCGc -3'
miRNA:   3'- -CCGCCa---CCGC----------GCCaaAGACCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 27397 0.77 0.219558
Target:  5'- aGCGGUGGUGCGacuggcGUcUUCgGGGGGGCGg -3'
miRNA:   3'- cCGCCACCGCGC------CA-AAGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 2248 0.76 0.246723
Target:  5'- aGGCGGcgGGCGCGccg-CcGGGGGGCGg -3'
miRNA:   3'- -CCGCCa-CCGCGCcaaaGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 56195 0.75 0.289356
Target:  5'- gGGUGG-GGUGUGGUggguacGGGGGACGg -3'
miRNA:   3'- -CCGCCaCCGCGCCAaaga--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 15321 0.75 0.289356
Target:  5'- uGGCGGccgagggccccGGCGCGGUagC-GGGGGGCGa -3'
miRNA:   3'- -CCGCCa----------CCGCGCCAaaGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 4847 0.75 0.295898
Target:  5'- cGGCGG-GGCGaCGGUccgggUUCgGGGuGGGCGg -3'
miRNA:   3'- -CCGCCaCCGC-GCCA-----AAGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 2539 0.74 0.302555
Target:  5'- gGGCGGggGGCGCGGcccccgCgGGaGGGGCGg -3'
miRNA:   3'- -CCGCCa-CCGCGCCaaa---GaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 57521 0.74 0.309326
Target:  5'- uGGgGG-GGCGUGGguguggUUC-GGGGGGCGg -3'
miRNA:   3'- -CCgCCaCCGCGCCa-----AAGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 123514 0.73 0.344906
Target:  5'- -uCGuGUGGCGCGucgUUCgGGGGGACGa -3'
miRNA:   3'- ccGC-CACCGCGCca-AAGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 145830 0.73 0.359939
Target:  5'- cGGCGGUcGGgGUGGgaguggUggUGGGGGACa -3'
miRNA:   3'- -CCGCCA-CCgCGCCa-----AagACCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 148411 0.73 0.359939
Target:  5'- gGGCGGggugGGCGcCGGgg-C-GGGGGugGg -3'
miRNA:   3'- -CCGCCa---CCGC-GCCaaaGaCCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 27222 0.73 0.375423
Target:  5'- gGGCGG-GGCGCGGgggaggCggccgcgGGGGaGGCGg -3'
miRNA:   3'- -CCGCCaCCGCGCCaaa---Ga------CCCC-CUGC- -5'
5435 5' -60.3 NC_001798.1 + 29907 0.73 0.383332
Target:  5'- uGGgGGUGGuCGCGGgcggugggCUcGGGGGCGg -3'
miRNA:   3'- -CCgCCACC-GCGCCaaa-----GAcCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 34574 0.72 0.391351
Target:  5'- cGGCGGacggcucacgcGGCGCGGcgUCUcGGuGGGACGc -3'
miRNA:   3'- -CCGCCa----------CCGCGCCaaAGA-CC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6239 0.72 0.391351
Target:  5'- cGGgGGgacgGGCGgGGgacg-GGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 32951 0.72 0.416053
Target:  5'- uGGgGGUGGgaGUGGgggg-GGGGGACGg -3'
miRNA:   3'- -CCgCCACCg-CGCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 100994 0.72 0.429612
Target:  5'- gGGCGGggagggggaggaaGGCGCGGa----GGGGGGCGg -3'
miRNA:   3'- -CCGCCa------------CCGCGCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 66543 0.71 0.440818
Target:  5'- aGGCGGggGGCGCugccgaaGGUUcgUGGGGGcACGc -3'
miRNA:   3'- -CCGCCa-CCGCG-------CCAAagACCCCC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.