miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 2248 0.76 0.246723
Target:  5'- aGGCGGcgGGCGCGccg-CcGGGGGGCGg -3'
miRNA:   3'- -CCGCCa-CCGCGCcaaaGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 2539 0.74 0.302555
Target:  5'- gGGCGGggGGCGCGGcccccgCgGGaGGGGCGg -3'
miRNA:   3'- -CCGCCa-CCGCGCCaaa---GaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 2577 0.71 0.450428
Target:  5'- gGGCGGggggcguccGCGCGGcucUUCUucGGGGGGCGc -3'
miRNA:   3'- -CCGCCac-------CGCGCCa--AAGA--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 2961 0.68 0.63991
Target:  5'- aGGCGG-GGCGCGucggCgugcGGcGGGGCGg -3'
miRNA:   3'- -CCGCCaCCGCGCcaaaGa---CC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 4390 0.71 0.468191
Target:  5'- uGGUGGUGGUgGUGGUgUC-GGcGGGGCGc -3'
miRNA:   3'- -CCGCCACCG-CGCCAaAGaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 4847 0.75 0.295898
Target:  5'- cGGCGG-GGCGaCGGUccgggUUCgGGGuGGGCGg -3'
miRNA:   3'- -CCGCCaCCGC-GCCA-----AAGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6239 0.72 0.391351
Target:  5'- cGGgGGgacgGGCGgGGgacg-GGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6267 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6293 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6319 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6345 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6387 0.67 0.698498
Target:  5'- gGGcCGGggGGC-CGGggggCcgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CCGcGCCaaa-Ga-CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6419 0.66 0.755227
Target:  5'- gGGaCGGggGGaCGgGGggacgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CC-GCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6451 0.66 0.755227
Target:  5'- gGGaCGGggGGaCGgGGggacgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CC-GCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6483 0.66 0.755227
Target:  5'- gGGaCGGggGGaCGgGGggacgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CC-GCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6535 0.67 0.688816
Target:  5'- cGGgGGgacgGGC-CGGggggacgGGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGcGCCaaaga--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6577 0.67 0.688816
Target:  5'- cGGgGGgacgGGC-CGGggggacgGGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGcGCCaaaga--CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6615 0.66 0.782351
Target:  5'- gGGaCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 9134 0.67 0.694631
Target:  5'- aGGUGGUcugcggcacgcgGGCGCGGcgccgcccgcgCcGGGGGGCa -3'
miRNA:   3'- -CCGCCA------------CCGCGCCaaa--------GaCCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 9669 0.78 0.194988
Target:  5'- cGCGGagGGCGCGGga--UGGGGGGCu -3'
miRNA:   3'- cCGCCa-CCGCGCCaaagACCCCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.