miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 153041 0.69 0.582075
Target:  5'- cGGCGGc-GCGCGGUUggccggcgccgccccCUGGGgcGGGCGg -3'
miRNA:   3'- -CCGCCacCGCGCCAAa--------------GACCC--CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 150624 0.66 0.745975
Target:  5'- gGGCuccuGGgccGCGCGGggcugUCUcgcGGGGGGCGu -3'
miRNA:   3'- -CCG----CCac-CGCGCCaa---AGA---CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 150576 0.67 0.708128
Target:  5'- cGCGGggcGGCGCGGagaCggcGGGGGAg- -3'
miRNA:   3'- cCGCCa--CCGCGCCaaaGa--CCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 150425 0.71 0.442557
Target:  5'- cGGCGGcGGCGCGGgg-CggacuccggacgcgcGGGGcGACGg -3'
miRNA:   3'- -CCGCCaCCGCGCCaaaGa--------------CCCC-CUGC- -5'
5435 5' -60.3 NC_001798.1 + 149398 0.7 0.532953
Target:  5'- cGCGGggGGCGuCGGguagUC-GGGGGGCc -3'
miRNA:   3'- cCGCCa-CCGC-GCCaa--AGaCCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 149170 0.71 0.468191
Target:  5'- cGGcCGGUGGUcCGGU----GGGGGGCGg -3'
miRNA:   3'- -CC-GCCACCGcGCCAaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 148411 0.73 0.359939
Target:  5'- gGGCGGggugGGCGcCGGgg-C-GGGGGugGg -3'
miRNA:   3'- -CCGCCa---CCGC-GCCaaaGaCCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 148037 0.7 0.542481
Target:  5'- cGCGuG-GGCGCGGg--CggGGGGGugGu -3'
miRNA:   3'- cCGC-CaCCGCGCCaaaGa-CCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 147609 0.67 0.66933
Target:  5'- aGGCGGcGGgGagaGGggg--GGGGGGCGg -3'
miRNA:   3'- -CCGCCaCCgCg--CCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 146096 0.67 0.688816
Target:  5'- aGGCGGgcgGGCGaaGgaaggGGGGGugGu -3'
miRNA:   3'- -CCGCCa--CCGCgcCaaagaCCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 146038 0.71 0.477206
Target:  5'- cGGUGGggGGCGUGGUggugaacgaUGGGGGGa- -3'
miRNA:   3'- -CCGCCa-CCGCGCCAaag------ACCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 145830 0.73 0.359939
Target:  5'- cGGCGGUcGGgGUGGgaguggUggUGGGGGACa -3'
miRNA:   3'- -CCGCCA-CCgCGCCa-----AagACCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 138562 0.67 0.708128
Target:  5'- aGGCGGUcGC-CGGUccacaggGGGGGGCa -3'
miRNA:   3'- -CCGCCAcCGcGCCAaaga---CCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 138151 0.66 0.755227
Target:  5'- uGCGGUcGCGCccccGGgucCUGGGGGcGCGa -3'
miRNA:   3'- cCGCCAcCGCG----CCaaaGACCCCC-UGC- -5'
5435 5' -60.3 NC_001798.1 + 135449 0.66 0.745975
Target:  5'- cGGCGGcaccggGGCuGCG--UUCUGGGGG-Cu -3'
miRNA:   3'- -CCGCCa-----CCG-CGCcaAAGACCCCCuGc -5'
5435 5' -60.3 NC_001798.1 + 131359 0.69 0.571381
Target:  5'- cGGCGcccGGCGCGGccUC-GGGGGAUc -3'
miRNA:   3'- -CCGCca-CCGCGCCaaAGaCCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 125662 0.66 0.764379
Target:  5'- aGGCGG-GG-GCGGcugaggUCaGGGGGGuCGg -3'
miRNA:   3'- -CCGCCaCCgCGCCaa----AGaCCCCCU-GC- -5'
5435 5' -60.3 NC_001798.1 + 123514 0.73 0.344906
Target:  5'- -uCGuGUGGCGCGucgUUCgGGGGGACGa -3'
miRNA:   3'- ccGC-CACCGCGCca-AAGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 122110 0.66 0.771624
Target:  5'- cGGCGGggGGCGCuuugccagCcgGGGGGGCc -3'
miRNA:   3'- -CCGCCa-CCGCGccaaa---Ga-CCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 112509 0.66 0.782351
Target:  5'- uGGCGGUGGCGCGaac-----GGGACc -3'
miRNA:   3'- -CCGCCACCGCGCcaaagaccCCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.