miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 9703 0.67 0.696565
Target:  5'- gGGCGGgugggcucgacgGGCuCGGgcuggcgCUGGGGGAgGu -3'
miRNA:   3'- -CCGCCa-----------CCGcGCCaaa----GACCCCCUgC- -5'
5435 5' -60.3 NC_001798.1 + 11181 0.67 0.721509
Target:  5'- gGGCGGUGGgGCGGgccUgccgaacggcccgcUUggaccuagaccucuUGGGGGGCc -3'
miRNA:   3'- -CCGCCACCgCGCCa--A--------------AG--------------ACCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 11662 0.67 0.688816
Target:  5'- gGGCGGgGGuCG-GGUcUCgGGGGGAgGa -3'
miRNA:   3'- -CCGCCaCC-GCgCCAaAGaCCCCCUgC- -5'
5435 5' -60.3 NC_001798.1 + 12717 0.67 0.692694
Target:  5'- cGGCGGgGGCGUGGUgcggcgcgacgucCUGGaucgacGGGAUGu -3'
miRNA:   3'- -CCGCCaCCGCGCCAaa-----------GACC------CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 14991 0.68 0.649732
Target:  5'- gGGCGGgggGGCGaGGcgugUUGGGGG-CGa -3'
miRNA:   3'- -CCGCCa--CCGCgCCaaa-GACCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 15050 0.68 0.620257
Target:  5'- gGGCGGaugGGCcCGGggcgCgcgGGGGGugGu -3'
miRNA:   3'- -CCGCCa--CCGcGCCaaa-Ga--CCCCCugC- -5'
5435 5' -60.3 NC_001798.1 + 15110 0.67 0.66933
Target:  5'- aGGcCGGUGGCGCuGUcgUCguccucGGGGGGu- -3'
miRNA:   3'- -CC-GCCACCGCGcCAa-AGa-----CCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 15321 0.75 0.289356
Target:  5'- uGGCGGccgagggccccGGCGCGGUagC-GGGGGGCGa -3'
miRNA:   3'- -CCGCCa----------CCGCGCCAaaGaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 15481 0.7 0.514081
Target:  5'- gGGCGGgggGGuCGUGGgggCugguguggUGGGGGGCGu -3'
miRNA:   3'- -CCGCCa--CC-GCGCCaaaG--------ACCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 15744 0.66 0.755227
Target:  5'- uGGCGGUGGC-CGacacagGGaGGGGCGu -3'
miRNA:   3'- -CCGCCACCGcGCcaaagaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 16067 0.69 0.590855
Target:  5'- cGCuGGgGGCgGCGGgcgUCUGuGGGGGCa -3'
miRNA:   3'- cCG-CCaCCG-CGCCaa-AGAC-CCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 16174 0.69 0.600636
Target:  5'- gGGCGGcc-CGCGGggaccgGGGGGACGc -3'
miRNA:   3'- -CCGCCaccGCGCCaaaga-CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 18232 0.69 0.590855
Target:  5'- gGGCGGgaagGGUGgaUGGUUUCcGGGGGccCGg -3'
miRNA:   3'- -CCGCCa---CCGC--GCCAAAGaCCCCCu-GC- -5'
5435 5' -60.3 NC_001798.1 + 20348 0.67 0.679091
Target:  5'- aGGCGGuUGGCGCugccGGgcgggUUC-GGGGcGGCa -3'
miRNA:   3'- -CCGCC-ACCGCG----CCa----AAGaCCCC-CUGc -5'
5435 5' -60.3 NC_001798.1 + 22357 0.71 0.459264
Target:  5'- gGGCGG-GGCcgcgcauaauGCGGUUccacCUGGGGG-CGg -3'
miRNA:   3'- -CCGCCaCCG----------CGCCAAa---GACCCCCuGC- -5'
5435 5' -60.3 NC_001798.1 + 23849 0.77 0.209427
Target:  5'- cGGCGGgcugGGCGacagccgcccCGGccUCUGGGGGGCGc -3'
miRNA:   3'- -CCGCCa---CCGC----------GCCaaAGACCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 24127 0.68 0.663459
Target:  5'- cGGCaGcGUGGCGCGGgccgugccccacCUGGGGuACGc -3'
miRNA:   3'- -CCG-C-CACCGCGCCaaa---------GACCCCcUGC- -5'
5435 5' -60.3 NC_001798.1 + 26528 0.69 0.571381
Target:  5'- gGGCGGcGGCGUGGaggugGuGGGGACc -3'
miRNA:   3'- -CCGCCaCCGCGCCaaagaC-CCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 26819 0.68 0.630083
Target:  5'- gGGCGGgggucgGGCggGCGGgggUC-GGGcGGGCGg -3'
miRNA:   3'- -CCGCCa-----CCG--CGCCaa-AGaCCC-CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 26864 0.68 0.630083
Target:  5'- gGGCGGgggucgGGCggGCGGgggUC-GGGcGGGCGg -3'
miRNA:   3'- -CCGCCa-----CCG--CGCCaa-AGaCCC-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.