miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 6319 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6293 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6267 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 41369 0.66 0.773423
Target:  5'- cGGCGGcucaUGGCGcCGGggauggCcgGGaGGGACa -3'
miRNA:   3'- -CCGCC----ACCGC-GCCaaa---Ga-CC-CCCUGc -5'
5435 5' -60.3 NC_001798.1 + 30153 0.66 0.773423
Target:  5'- gGGCGGggGGcCGgGGUgag-GGaGGGACa -3'
miRNA:   3'- -CCGCCa-CC-GCgCCAaagaCC-CCCUGc -5'
5435 5' -60.3 NC_001798.1 + 122110 0.66 0.771624
Target:  5'- cGGCGGggGGCGCuuugccagCcgGGGGGGCc -3'
miRNA:   3'- -CCGCCa-CCGCGccaaa---Ga-CCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 6387 0.67 0.698498
Target:  5'- gGGcCGGggGGC-CGGggggCcgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CCGcGCCaaa-Ga-CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 9703 0.67 0.696565
Target:  5'- gGGCGGgugggcucgacgGGCuCGGgcuggcgCUGGGGGAgGu -3'
miRNA:   3'- -CCGCCa-----------CCGcGCCaaa----GACCCCCUgC- -5'
5435 5' -60.3 NC_001798.1 + 9134 0.67 0.694631
Target:  5'- aGGUGGUcugcggcacgcgGGCGCGGcgccgcccgcgCcGGGGGGCa -3'
miRNA:   3'- -CCGCCA------------CCGCGCCaaa--------GaCCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 37549 0.67 0.692694
Target:  5'- gGGUGGUguGGCgggacgugucgucauGCGGUUUUUGGGGuGgucGCGg -3'
miRNA:   3'- -CCGCCA--CCG---------------CGCCAAAGACCCC-C---UGC- -5'
5435 5' -60.3 NC_001798.1 + 12717 0.67 0.692694
Target:  5'- cGGCGGgGGCGUGGUgcggcgcgacgucCUGGaucgacGGGAUGu -3'
miRNA:   3'- -CCGCCaCCGCGCCAaa-----------GACC------CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 11662 0.67 0.688816
Target:  5'- gGGCGGgGGuCG-GGUcUCgGGGGGAgGa -3'
miRNA:   3'- -CCGCCaCC-GCgCCAaAGaCCCCCUgC- -5'
5435 5' -60.3 NC_001798.1 + 51807 0.67 0.698498
Target:  5'- uGCgGGUGGCGaucaacgGGUgggUCUGcGGGACGc -3'
miRNA:   3'- cCG-CCACCGCg------CCAa--AGACcCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 102476 0.67 0.698498
Target:  5'- gGGCGGgaggaGGCG-GGUag-UGcGGGGACGg -3'
miRNA:   3'- -CCGCCa----CCGCgCCAaagAC-CCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 74527 0.67 0.698498
Target:  5'- cGGgGGgcucggGGCGCucuuugucGGUguggUCcccagGGGGGACGg -3'
miRNA:   3'- -CCgCCa-----CCGCG--------CCAa---AGa----CCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 138562 0.67 0.708128
Target:  5'- aGGCGGUcGC-CGGUccacaggGGGGGGCa -3'
miRNA:   3'- -CCGCCAcCGcGCCAaaga---CCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 150576 0.67 0.708128
Target:  5'- cGCGGggcGGCGCGGagaCggcGGGGGAg- -3'
miRNA:   3'- cCGCCa--CCGCGCCaaaGa--CCCCCUgc -5'
5435 5' -60.3 NC_001798.1 + 48172 0.67 0.711964
Target:  5'- uGGCGGccacgcacgcccggcUGGCgGCGGUacagCUGuGGGACa -3'
miRNA:   3'- -CCGCC---------------ACCG-CGCCAaa--GACcCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 96967 0.67 0.717699
Target:  5'- aGGCGcUGGCGCGGaccgCgGcGGGcGGCGg -3'
miRNA:   3'- -CCGCcACCGCGCCaaa-GaC-CCC-CUGC- -5'
5435 5' -60.3 NC_001798.1 + 6577 0.67 0.688816
Target:  5'- cGGgGGgacgGGC-CGGggggacgGGGGGACGg -3'
miRNA:   3'- -CCgCCa---CCGcGCCaaaga--CCCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.