miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5439 3' -56.3 NC_001798.1 + 22755 0.69 0.725626
Target:  5'- -gGUCGC-GAu--GGCGGACGaGGACGg -3'
miRNA:   3'- uaCAGUGuCUcuuCCGCCUGC-CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 26532 0.67 0.843655
Target:  5'- ----gGCGGcguGGAGGUGGugGGGACc -3'
miRNA:   3'- uacagUGUCu--CUUCCGCCugCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 26811 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26841 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26871 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26916 0.73 0.504379
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGuCGg -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCU-GC- -5'
5439 3' -56.3 NC_001798.1 + 26960 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26990 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 27020 0.68 0.792126
Target:  5'- -gGUCggGCGGGcGggGGuCGGGCGGG-CGg -3'
miRNA:   3'- uaCAG--UGUCU-CuuCC-GCCUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 27189 0.68 0.782986
Target:  5'- -cGggCGCGGGGGgagGGGCGGGggaagccccCGGGGCGg -3'
miRNA:   3'- uaCa-GUGUCUCU---UCCGCCU---------GCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 27242 0.79 0.250685
Target:  5'- -gGcCGCGGGGGAGGCGGccGCGGGACc -3'
miRNA:   3'- uaCaGUGUCUCUUCCGCC--UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 27334 0.72 0.593958
Target:  5'- -gGUgGCGGGGAaccgugugcGGGCGGGCGGGuGCu -3'
miRNA:   3'- uaCAgUGUCUCU---------UCCGCCUGCCC-UGc -5'
5439 3' -56.3 NC_001798.1 + 27597 0.68 0.801122
Target:  5'- -aGggACGGGGAAGGgGGcgcGCGGGGCu -3'
miRNA:   3'- uaCagUGUCUCUUCCgCC---UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 28781 0.66 0.895017
Target:  5'- ------aGGAGGAGGCGG-CGGcGGCGg -3'
miRNA:   3'- uacagugUCUCUUCCGCCuGCC-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 29914 0.72 0.583808
Target:  5'- -gGUCGCGGgcGGuGGGCucggGGGCGGGACGc -3'
miRNA:   3'- uaCAGUGUC--UCuUCCG----CCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 30391 0.67 0.85938
Target:  5'- ---aCACGGAGAuguucgAGGCGGGCcugauGGACGc -3'
miRNA:   3'- uacaGUGUCUCU------UCCGCCUGc----CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 30945 0.72 0.573693
Target:  5'- -gGUCGgGcGGggGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAGUgUcUCuuCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 31146 0.69 0.725626
Target:  5'- -cGgCGCGGGGgcGGCGGuGCGgGGGCGa -3'
miRNA:   3'- uaCaGUGUCUCuuCCGCC-UGC-CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 31341 0.66 0.895017
Target:  5'- ----gGCGGGGGgcgcgcgcAGGCGcGGCGGGugGg -3'
miRNA:   3'- uacagUGUCUCU--------UCCGC-CUGCCCugC- -5'
5439 3' -56.3 NC_001798.1 + 31865 0.67 0.854746
Target:  5'- -cGcCGCGGAGggGGCGG-CGGcccgcccccggaagaGGCGc -3'
miRNA:   3'- uaCaGUGUCUCuuCCGCCuGCC---------------CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.