miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5439 3' -56.3 NC_001798.1 + 44 0.69 0.73544
Target:  5'- gGUGUuuuUugGGGGGgggcgcgaAGGCGGGCGGcGGCGg -3'
miRNA:   3'- -UACA---GugUCUCU--------UCCGCCUGCC-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 2517 0.66 0.881419
Target:  5'- -gGcCGCGGcGgcGGCGucGGCGGGGCGg -3'
miRNA:   3'- uaCaGUGUCuCuuCCGC--CUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 2557 0.71 0.665372
Target:  5'- ---cCGCGGGaGGGGCGGccGCGGGGCGg -3'
miRNA:   3'- uacaGUGUCUcUUCCGCC--UGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 2672 0.66 0.901474
Target:  5'- ---cCGCGGcgcGGAGGCGGGCGcGGCGa -3'
miRNA:   3'- uacaGUGUCu--CUUCCGCCUGCcCUGC- -5'
5439 3' -56.3 NC_001798.1 + 4256 0.71 0.634764
Target:  5'- -cGUCAgAcGAGGAGGCGGAUGcaGACGa -3'
miRNA:   3'- uaCAGUgU-CUCUUCCGCCUGCc-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 4581 0.72 0.573693
Target:  5'- -gGUCcgcgGCGGAGAAGGCGaGCGGGcCGc -3'
miRNA:   3'- uaCAG----UGUCUCUUCCGCcUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 4625 0.7 0.685657
Target:  5'- -cGUCGCgcuccGGGGggGGC-GACGGGAUc -3'
miRNA:   3'- uaCAGUG-----UCUCuuCCGcCUGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 5969 0.66 0.874287
Target:  5'- -gGUCGCcgccgcaccAGGGGAcaccggcugcgcGGCGGAgacCGGGACGg -3'
miRNA:   3'- uaCAGUG---------UCUCUU------------CCGCCU---GCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 6048 0.69 0.754791
Target:  5'- -cGagACAGAGAcgccGGCGGcgaGCGGGGCa -3'
miRNA:   3'- uaCagUGUCUCUu---CCGCC---UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 6249 0.66 0.888331
Target:  5'- ----gGCGGGGGacGGGgGGACGGGcCGg -3'
miRNA:   3'- uacagUGUCUCU--UCCgCCUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 6669 0.66 0.874287
Target:  5'- --cUCGCAGGccGGGCgccgccuucguGGACGGGACa -3'
miRNA:   3'- uacAGUGUCUcuUCCG-----------CCUGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 8552 0.7 0.715732
Target:  5'- -gGUCGCGGc-GAGG-GGugGGGGCGa -3'
miRNA:   3'- uaCAGUGUCucUUCCgCCugCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 14971 0.66 0.901474
Target:  5'- cAUGUCcuuaGCgGGAGcuuGGGCGGG-GGGGCGa -3'
miRNA:   3'- -UACAG----UG-UCUCu--UCCGCCUgCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 16064 0.69 0.72464
Target:  5'- -gGUCGCuGGGGgcGGCGGGCgucugugGGGGCa -3'
miRNA:   3'- uaCAGUG-UCUCuuCCGCCUG-------CCCUGc -5'
5439 3' -56.3 NC_001798.1 + 16221 0.71 0.665372
Target:  5'- -cGcCGCcuguGGGggGGCGGugGGGcCGg -3'
miRNA:   3'- uaCaGUGu---CUCuuCCGCCugCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 18216 0.67 0.835501
Target:  5'- --cUCGcCGGGGGAcGGUGGGCGGGAa- -3'
miRNA:   3'- uacAGU-GUCUCUU-CCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 18300 0.68 0.822076
Target:  5'- gGUGcUCGCcGGGAAGGCcggGGccguguuugucuccgGCGGGACGg -3'
miRNA:   3'- -UAC-AGUGuCUCUUCCG---CC---------------UGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 19763 0.67 0.866192
Target:  5'- uGUGUggcCGCAGGGAuaggggcAGGCGG-CGGGGa- -3'
miRNA:   3'- -UACA---GUGUCUCU-------UCCGCCuGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 20340 0.67 0.866939
Target:  5'- gGUGgCGCAGGcGGuuggcgcugccGGGCGGGuuCGGGGCGg -3'
miRNA:   3'- -UACaGUGUCU-CU-----------UCCGCCU--GCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 20934 0.66 0.873561
Target:  5'- cAUGauUCGCAGGcGucguguuGAGGCGGGCGGGucCGg -3'
miRNA:   3'- -UAC--AGUGUCU-C-------UUCCGCCUGCCCu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.