miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5439 3' -56.3 NC_001798.1 + 114484 0.86 0.095559
Target:  5'- cUGcUCACGGGGGAGGCccuGGACGGGACGg -3'
miRNA:   3'- uAC-AGUGUCUCUUCCG---CCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 27242 0.79 0.250685
Target:  5'- -gGcCGCGGGGGAGGCGGccGCGGGACc -3'
miRNA:   3'- uaCaGUGUCUCUUCCGCC--UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 83672 0.79 0.262936
Target:  5'- -cGUCugGGAugcacuGGCGGGCGGGACGg -3'
miRNA:   3'- uaCAGugUCUcuu---CCGCCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 112771 0.76 0.395272
Target:  5'- ---cCGCGGGGAGGGCGGACGcacGGAUGu -3'
miRNA:   3'- uacaGUGUCUCUUCCGCCUGC---CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 60989 0.75 0.403778
Target:  5'- uGUGUCgcagGCGGAGggGGCGGAUGacgcGGACc -3'
miRNA:   3'- -UACAG----UGUCUCuuCCGCCUGC----CCUGc -5'
5439 3' -56.3 NC_001798.1 + 152940 0.75 0.4124
Target:  5'- cAUG-CGCGGGGAuGGCGGcCGGGACc -3'
miRNA:   3'- -UACaGUGUCUCUuCCGCCuGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 139366 0.75 0.421134
Target:  5'- -cGUCcgGCGGGGAGGGCucGCGGGACGu -3'
miRNA:   3'- uaCAG--UGUCUCUUCCGccUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 146085 0.75 0.421134
Target:  5'- -gGUC-CGGGGcGAGGCGGGCGGG-CGa -3'
miRNA:   3'- uaCAGuGUCUC-UUCCGCCUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 150915 0.75 0.438932
Target:  5'- -cGgggCGCucuucGGggGGCGGGCGGGACGu -3'
miRNA:   3'- uaCa--GUGuc---UCuuCCGCCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 150416 0.75 0.438932
Target:  5'- ---cCACGGGGgcGGCGGcggcGCGGGGCGg -3'
miRNA:   3'- uacaGUGUCUCuuCCGCC----UGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 146403 0.74 0.475769
Target:  5'- ----aGCAGcaAGAGGGgGGACGGGGCGa -3'
miRNA:   3'- uacagUGUC--UCUUCCgCCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 59655 0.74 0.498596
Target:  5'- --cUCGCGGAGAGGGgGGGCgacucggcucgcgugGGGGCGg -3'
miRNA:   3'- uacAGUGUCUCUUCCgCCUG---------------CCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 26916 0.73 0.504379
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGuCGg -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCU-GC- -5'
5439 3' -56.3 NC_001798.1 + 132143 0.73 0.523859
Target:  5'- -cGcCGCcgGGGGccGGCGGGCGGGGCGc -3'
miRNA:   3'- uaCaGUG--UCUCuuCCGCCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 36078 0.73 0.54362
Target:  5'- -cGggCGCGGGGuagguGGGUGGGCGGGugGu -3'
miRNA:   3'- uaCa-GUGUCUCu----UCCGCCUGCCCugC- -5'
5439 3' -56.3 NC_001798.1 + 30945 0.72 0.573693
Target:  5'- -gGUCGgGcGGggGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAGUgUcUCuuCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 4581 0.72 0.573693
Target:  5'- -gGUCcgcgGCGGAGAAGGCGaGCGGGcCGc -3'
miRNA:   3'- uaCAG----UGUCUCUUCCGCcUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 29914 0.72 0.583808
Target:  5'- -gGUCGCGGgcGGuGGGCucggGGGCGGGACGc -3'
miRNA:   3'- uaCAGUGUC--UCuUCCG----CCUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 69482 0.72 0.583808
Target:  5'- -cGUCGCGGcGAgcgauGGGCGGGCGcaGGACGc -3'
miRNA:   3'- uaCAGUGUCuCU-----UCCGCCUGC--CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 64492 0.72 0.593958
Target:  5'- -cGUCuugaaccgcCGGAGggGGUGGGCGGGGu- -3'
miRNA:   3'- uaCAGu--------GUCUCuuCCGCCUGCCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.