miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 3' -60.9 NC_001798.1 + 150672 0.78 0.152356
Target:  5'- cGCCGCCGCGGcgucUUCGC-CCACCCgcgcGCCu -3'
miRNA:   3'- -UGGCGGUGCU----AGGCGaGGUGGGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 28964 0.78 0.156154
Target:  5'- cGCCGCCcCG--CCGCUCCGCCC-GCCc -3'
miRNA:   3'- -UGGCGGuGCuaGGCGAGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 145507 0.78 0.160037
Target:  5'- gGCCGCCGCGcgCC-C-CCGCCCgGCCg -3'
miRNA:   3'- -UGGCGGUGCuaGGcGaGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 145465 0.78 0.160037
Target:  5'- gGCCGCCGCGcgCC-C-CCGCCCgGCCg -3'
miRNA:   3'- -UGGCGGUGCuaGGcGaGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 145423 0.78 0.160037
Target:  5'- gGCCGCCGCGcgCC-C-CCGCCCgGCCg -3'
miRNA:   3'- -UGGCGGUGCuaGGcGaGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 75261 0.76 0.217397
Target:  5'- gGCCGCCACGGcggUCCgGCUcgcggcgcgcgaugCCGCCCUGgCCc -3'
miRNA:   3'- -UGGCGGUGCU---AGG-CGA--------------GGUGGGAC-GG- -5'
5448 3' -60.9 NC_001798.1 + 16448 0.76 0.218945
Target:  5'- cGCCGCCGCGAcaCC-CUCCAUaCUGCCg -3'
miRNA:   3'- -UGGCGGUGCUa-GGcGAGGUGgGACGG- -5'
5448 3' -60.9 NC_001798.1 + 1337 0.76 0.224171
Target:  5'- cCCGCCGCGGcCCGCgcagcUCCGCCggGCCg -3'
miRNA:   3'- uGGCGGUGCUaGGCG-----AGGUGGgaCGG- -5'
5448 3' -60.9 NC_001798.1 + 137953 0.75 0.234941
Target:  5'- uCCGCCGCGcgCUGCUCCcgcuccagcGCCCccGCCu -3'
miRNA:   3'- uGGCGGUGCuaGGCGAGG---------UGGGa-CGG- -5'
5448 3' -60.9 NC_001798.1 + 82017 0.75 0.257191
Target:  5'- cGCCGCCGCGG-CCGCcgCCAgacaacagcggguCCCUcGCCg -3'
miRNA:   3'- -UGGCGGUGCUaGGCGa-GGU-------------GGGA-CGG- -5'
5448 3' -60.9 NC_001798.1 + 25152 0.74 0.28241
Target:  5'- gGCCGCCccucccGCGGgggCCGCgccccCCGCCCcGCCg -3'
miRNA:   3'- -UGGCGG------UGCUa--GGCGa----GGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 58932 0.74 0.288852
Target:  5'- --gGCCACGG-CCGCUCC-CCC-GCCg -3'
miRNA:   3'- uggCGGUGCUaGGCGAGGuGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 7893 0.74 0.294087
Target:  5'- gGCCGCCAUGAauuuuaucgccgCgGCUgCGCCCUGCg -3'
miRNA:   3'- -UGGCGGUGCUa-----------GgCGAgGUGGGACGg -5'
5448 3' -60.9 NC_001798.1 + 70131 0.74 0.295407
Target:  5'- cGCCGgCAUGAcccccccgUCCGCUCCACCC--CCa -3'
miRNA:   3'- -UGGCgGUGCU--------AGGCGAGGUGGGacGG- -5'
5448 3' -60.9 NC_001798.1 + 48389 0.74 0.295407
Target:  5'- uGCCGCCGCGA-CCGCacgggcccCCGCCCgcucgGCUu -3'
miRNA:   3'- -UGGCGGUGCUaGGCGa-------GGUGGGa----CGG- -5'
5448 3' -60.9 NC_001798.1 + 25196 0.74 0.302078
Target:  5'- cGCCGCCGCGG-CCGC-CgCGCCCcGCg -3'
miRNA:   3'- -UGGCGGUGCUaGGCGaG-GUGGGaCGg -5'
5448 3' -60.9 NC_001798.1 + 5411 0.73 0.308865
Target:  5'- -gCGCCGCcg-CCGCUCCGCCCgcgcgGCa -3'
miRNA:   3'- ugGCGGUGcuaGGCGAGGUGGGa----CGg -5'
5448 3' -60.9 NC_001798.1 + 80629 0.73 0.308865
Target:  5'- gGCCGCCGCGAcccaCCGCaCC-CCC-GCCg -3'
miRNA:   3'- -UGGCGGUGCUa---GGCGaGGuGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 78291 0.73 0.315072
Target:  5'- gGCCGCCGCGGagcagauaUCCGCggCCcggaaugACCCggagGCCa -3'
miRNA:   3'- -UGGCGGUGCU--------AGGCGa-GG-------UGGGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 75087 0.73 0.315767
Target:  5'- aGCCGCCACGGUCC-CUCCcgcaccggauACCCccCCg -3'
miRNA:   3'- -UGGCGGUGCUAGGcGAGG----------UGGGacGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.