miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 3' -60.9 NC_001798.1 + 140 0.66 0.728085
Target:  5'- gGCCGCUcccccGCGGgcgCCGCcccUCCcCCCgcgcGCCg -3'
miRNA:   3'- -UGGCGG-----UGCUa--GGCG---AGGuGGGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 383 0.69 0.55237
Target:  5'- cCCGCCACccccucccUCCcCUCCAUCCcGCCg -3'
miRNA:   3'- uGGCGGUGcu------AGGcGAGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 465 0.67 0.620802
Target:  5'- gGCCGCCucccccGCGG-CCGcCUCCcccgcGCCCcGCCc -3'
miRNA:   3'- -UGGCGG------UGCUaGGC-GAGG-----UGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 680 0.68 0.61095
Target:  5'- cCCGCC-CGAcccCCGC-CCGCCCgacccccGCCc -3'
miRNA:   3'- uGGCGGuGCUa--GGCGaGGUGGGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 725 0.68 0.61095
Target:  5'- cCCGCC-CGAcccCCGC-CCGCCCgacccccGCCc -3'
miRNA:   3'- uGGCGGuGCUa--GGCGaGGUGGGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 770 0.68 0.61095
Target:  5'- cCCGCC-CGAcccCCGC-CCGCCCgacccccGCCc -3'
miRNA:   3'- uGGCGGuGCUa--GGCGaGGUGGGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 815 0.68 0.61095
Target:  5'- cCCGCC-CGAcccCCGC-CCGCCCgacccccGCCc -3'
miRNA:   3'- uGGCGGuGCUa--GGCGaGGUGGGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 860 0.68 0.61095
Target:  5'- cCCGCC-CGAcccCCGC-CCGCCCgacccccGCCc -3'
miRNA:   3'- uGGCGGuGCUa--GGCGaGGUGGGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 1162 0.7 0.476336
Target:  5'- cCCGCgGCGGUCCccaccaccuccacGCcgCCGCCC-GCCg -3'
miRNA:   3'- uGGCGgUGCUAGG-------------CGa-GGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 1337 0.76 0.224171
Target:  5'- cCCGCCGCGGcCCGCgcagcUCCGCCggGCCg -3'
miRNA:   3'- uGGCGGUGCUaGGCG-----AGGUGGgaCGG- -5'
5448 3' -60.9 NC_001798.1 + 2072 0.66 0.679832
Target:  5'- cCCGCCGCGcUCgGCggaCCACuCCgggggggGCCc -3'
miRNA:   3'- uGGCGGUGCuAGgCGa--GGUG-GGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 2855 0.67 0.660219
Target:  5'- gGCgGCCACGGcggccUCGCUgCCGCCg-GCCa -3'
miRNA:   3'- -UGgCGGUGCUa----GGCGA-GGUGGgaCGG- -5'
5448 3' -60.9 NC_001798.1 + 3052 0.67 0.620802
Target:  5'- gGCCGCCAgGucgCCGUcgaagcccUCCGCCagcGCCu -3'
miRNA:   3'- -UGGCGGUgCua-GGCG--------AGGUGGga-CGG- -5'
5448 3' -60.9 NC_001798.1 + 3121 0.67 0.630662
Target:  5'- cACgGCCACGcggcCCGcCUCCGCgCgccgGCCg -3'
miRNA:   3'- -UGgCGGUGCua--GGC-GAGGUGgGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 3514 0.66 0.718555
Target:  5'- gGCCGCCACG-UgCGC-CagGCCCcaGCCg -3'
miRNA:   3'- -UGGCGGUGCuAgGCGaGg-UGGGa-CGG- -5'
5448 3' -60.9 NC_001798.1 + 3550 0.68 0.562039
Target:  5'- cGCCGCCAUggcguaccccaGGUggggcacggcCCGCgCCACgCUGCCg -3'
miRNA:   3'- -UGGCGGUG-----------CUA----------GGCGaGGUGgGACGG- -5'
5448 3' -60.9 NC_001798.1 + 3970 0.67 0.640523
Target:  5'- gGCCGCguCGGcgUCCaGCUcgaccgccggggCCGCCCgGCCg -3'
miRNA:   3'- -UGGCGguGCU--AGG-CGA------------GGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 4083 0.67 0.650378
Target:  5'- cGCCGCgGgGGUCCgggccggggcggGCUCgGCCCUGg- -3'
miRNA:   3'- -UGGCGgUgCUAGG------------CGAGgUGGGACgg -5'
5448 3' -60.9 NC_001798.1 + 5411 0.73 0.308865
Target:  5'- -gCGCCGCcg-CCGCUCCGCCCgcgcgGCa -3'
miRNA:   3'- ugGCGGUGcuaGGCGAGGUGGGa----CGg -5'
5448 3' -60.9 NC_001798.1 + 5450 0.69 0.523686
Target:  5'- cCCGgCGCGGgcggcuUCCGCuUCCGCCCgcgaUGCUa -3'
miRNA:   3'- uGGCgGUGCU------AGGCG-AGGUGGG----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.