miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 5' -55.3 NC_001798.1 + 20959 0.75 0.464551
Target:  5'- gCGGGCGGGuCCGGGgggAUGUCUGCCauaguGGCa -3'
miRNA:   3'- -GCUCGUCU-GGCUCa--UGUAGACGG-----CCG- -5'
5448 5' -55.3 NC_001798.1 + 127232 0.75 0.487135
Target:  5'- aCGAGCGGGCCGAGUuuaacaaccGCccccugaagcacgacGUCggGCUGGCg -3'
miRNA:   3'- -GCUCGUCUGGCUCA---------UG---------------UAGa-CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 121793 0.75 0.512169
Target:  5'- uCGGGCGGGgCCGGGccgGCcgUUGUCGGCa -3'
miRNA:   3'- -GCUCGUCU-GGCUCa--UGuaGACGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 102488 0.74 0.521939
Target:  5'- gCGGGUAGugCGGGgACGg--GCCGGCg -3'
miRNA:   3'- -GCUCGUCugGCUCaUGUagaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 88743 0.73 0.602199
Target:  5'- gGAGUacGGACCGGGggcGCGcaUGCCGGCc -3'
miRNA:   3'- gCUCG--UCUGGCUCa--UGUagACGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 131422 0.71 0.693889
Target:  5'- gCGAGCAGuacacgUCGAGUGUAUC-GCUGGCg -3'
miRNA:   3'- -GCUCGUCu-----GGCUCAUGUAGaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 59557 0.71 0.703934
Target:  5'- aGAGgGGGCUGGGgcucGCGUC-GCCGGUc -3'
miRNA:   3'- gCUCgUCUGGCUCa---UGUAGaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 30760 0.71 0.713919
Target:  5'- gCGuGgAGGCCGAGgcgGCcgUgcggGCCGGCa -3'
miRNA:   3'- -GCuCgUCUGGCUCa--UGuaGa---CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 153679 0.7 0.753071
Target:  5'- gCGGGCggGGACgCGGGgGCcgCcGCCGGCg -3'
miRNA:   3'- -GCUCG--UCUG-GCUCaUGuaGaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 57133 0.7 0.761666
Target:  5'- -cAGCGgcccgacGACCGAGUACAgccgCggGCUGGCg -3'
miRNA:   3'- gcUCGU-------CUGGCUCAUGUa---Ga-CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 52424 0.7 0.78135
Target:  5'- uGGGCGcGGCCGuGUACGcgCUGCacaCGGCc -3'
miRNA:   3'- gCUCGU-CUGGCuCAUGUa-GACG---GCCG- -5'
5448 5' -55.3 NC_001798.1 + 113338 0.69 0.79955
Target:  5'- aCGGGUGGACCGGacggGCGguggcGCCGGCa -3'
miRNA:   3'- -GCUCGUCUGGCUca--UGUaga--CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 25947 0.69 0.817146
Target:  5'- -cGGCAGugCGccGUGCG-CUgGCCGGCg -3'
miRNA:   3'- gcUCGUCugGCu-CAUGUaGA-CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 5928 0.69 0.824
Target:  5'- gGGGCGGGCCGuuccucgcgcACAUaaaggGCCGGCg -3'
miRNA:   3'- gCUCGUCUGGCuca-------UGUAga---CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 4015 0.69 0.825696
Target:  5'- -aAGCGGcCCGug-GCGUCgcgGCCGGCc -3'
miRNA:   3'- gcUCGUCuGGCucaUGUAGa--CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 137525 0.69 0.834071
Target:  5'- aCGAacaGGGCCGcgacgucugucaGGUACGUCUGCaGGCg -3'
miRNA:   3'- -GCUcg-UCUGGC------------UCAUGUAGACGgCCG- -5'
5448 5' -55.3 NC_001798.1 + 147020 0.69 0.83737
Target:  5'- cCGGGCGGGCCGgggcuuggccgccgaGGUGCGcCccgGCCGGa -3'
miRNA:   3'- -GCUCGUCUGGC---------------UCAUGUaGa--CGGCCg -5'
5448 5' -55.3 NC_001798.1 + 121473 0.68 0.842262
Target:  5'- gCGGGCGGGCUGuu--CGUCucccUGCCGGUc -3'
miRNA:   3'- -GCUCGUCUGGCucauGUAG----ACGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 122217 0.68 0.858066
Target:  5'- uCGAGUggcuGGACCGcgGGUGgGaagcUCUgGCCGGCg -3'
miRNA:   3'- -GCUCG----UCUGGC--UCAUgU----AGA-CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 81777 0.68 0.862651
Target:  5'- cCGGGCcuccgccccccCCGAGgggugGCGUCcGCCGGCa -3'
miRNA:   3'- -GCUCGucu--------GGCUCa----UGUAGaCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.