miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 5' -55.3 NC_001798.1 + 1439 0.66 0.94348
Target:  5'- aGGcGCGGugCGAGUGCGcCUcguccucgcagaaGuCCGGCg -3'
miRNA:   3'- gCU-CGUCugGCUCAUGUaGA-------------C-GGCCG- -5'
5448 5' -55.3 NC_001798.1 + 2403 0.67 0.88023
Target:  5'- aGGGCGGcgGCCGAGgGC----GCCGGCg -3'
miRNA:   3'- gCUCGUC--UGGCUCaUGuagaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 2955 0.66 0.929395
Target:  5'- gCGcGCAGGCgGGGcGCGUCgGCgugCGGCg -3'
miRNA:   3'- -GCuCGUCUGgCUCaUGUAGaCG---GCCG- -5'
5448 5' -55.3 NC_001798.1 + 4015 0.69 0.825696
Target:  5'- -aAGCGGcCCGug-GCGUCgcgGCCGGCc -3'
miRNA:   3'- gcUCGUCuGGCucaUGUAGa--CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 5928 0.69 0.824
Target:  5'- gGGGCGGGCCGuuccucgcgcACAUaaaggGCCGGCg -3'
miRNA:   3'- gCUCGUCUGGCuca-------UGUAga---CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 6261 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 6287 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 6313 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 6339 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 10920 0.67 0.912717
Target:  5'- gGGGCAGAUCGGagACuagCUGaCGGCg -3'
miRNA:   3'- gCUCGUCUGGCUcaUGua-GACgGCCG- -5'
5448 5' -55.3 NC_001798.1 + 20959 0.75 0.464551
Target:  5'- gCGGGCGGGuCCGGGgggAUGUCUGCCauaguGGCa -3'
miRNA:   3'- -GCUCGUCU-GGCUCa--UGUAGACGG-----CCG- -5'
5448 5' -55.3 NC_001798.1 + 21624 0.67 0.913307
Target:  5'- cCGAuCcGAuCCGGGUGCGUCggugccccgcucgccGCCGGCg -3'
miRNA:   3'- -GCUcGuCU-GGCUCAUGUAGa--------------CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 25629 0.66 0.931457
Target:  5'- gGAGUGGuccGCCGAGcGCGgcgggcuguccugcCUGCUGGCg -3'
miRNA:   3'- gCUCGUC---UGGCUCaUGUa-------------GACGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 25947 0.69 0.817146
Target:  5'- -cGGCAGugCGccGUGCG-CUgGCCGGCg -3'
miRNA:   3'- gcUCGUCugGCu-CAUGUaGA-CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 26933 0.67 0.906682
Target:  5'- uCGGGCGGGCgGGGU-CGg--GCgGGCg -3'
miRNA:   3'- -GCUCGUCUGgCUCAuGUagaCGgCCG- -5'
5448 5' -55.3 NC_001798.1 + 28643 0.68 0.873056
Target:  5'- gCGAGCGGGCCGAccGCGaccgguuCCGGCg -3'
miRNA:   3'- -GCUCGUCUGGCUcaUGUagac---GGCCG- -5'
5448 5' -55.3 NC_001798.1 + 30760 0.71 0.713919
Target:  5'- gCGuGgAGGCCGAGgcgGCcgUgcggGCCGGCa -3'
miRNA:   3'- -GCuCgUCUGGCUCa--UGuaGa---CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 37397 0.66 0.943931
Target:  5'- cCGAGCc-ACCGGGcGgGUCcgugggGCCGGCc -3'
miRNA:   3'- -GCUCGucUGGCUCaUgUAGa-----CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 38716 0.67 0.891248
Target:  5'- --uGCAGGCCcccgggauguaaaAGUGCAUCgucucGCCGGCc -3'
miRNA:   3'- gcuCGUCUGGc------------UCAUGUAGa----CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 41662 0.66 0.924074
Target:  5'- gGAGCGGACCGcGaGCAUggcgUGCCcGCa -3'
miRNA:   3'- gCUCGUCUGGCuCaUGUAg---ACGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.