miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 3' -60.3 NC_001798.1 + 28173 0.67 0.631733
Target:  5'- uGGGCGaacagccCCCCGAGCgAGGGCggGGg -3'
miRNA:   3'- uCCCGCc------GGGGCUUGgUCCUGaaCUa -5'
5450 3' -60.3 NC_001798.1 + 69522 0.67 0.631733
Target:  5'- cGGGGCguGGCCCgCGAGCUcgcgcGGGCUggUGGUg -3'
miRNA:   3'- -UCCCG--CCGGG-GCUUGGu----CCUGA--ACUA- -5'
5450 3' -60.3 NC_001798.1 + 91776 0.67 0.631733
Target:  5'- aAGGGCGGCCacgcccccugCCGAugacGCgCGGGGCgUGGg -3'
miRNA:   3'- -UCCCGCCGG----------GGCU----UG-GUCCUGaACUa -5'
5450 3' -60.3 NC_001798.1 + 22961 0.67 0.621694
Target:  5'- cGaGGCGGCCCCGGcguCCGGGGa----- -3'
miRNA:   3'- uC-CCGCCGGGGCUu--GGUCCUgaacua -5'
5450 3' -60.3 NC_001798.1 + 121304 0.67 0.621694
Target:  5'- uGGGGCGGCCgCGAAcuuCCGGGuCg---- -3'
miRNA:   3'- -UCCCGCCGGgGCUU---GGUCCuGaacua -5'
5450 3' -60.3 NC_001798.1 + 149981 0.67 0.621694
Target:  5'- gGGGcGCGGCgCCCGcggacGCCGGGGCg---- -3'
miRNA:   3'- -UCC-CGCCG-GGGCu----UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 2564 0.67 0.621694
Target:  5'- aGGGGCGGCCgCGGGgCGGGGg----- -3'
miRNA:   3'- -UCCCGCCGGgGCUUgGUCCUgaacua -5'
5450 3' -60.3 NC_001798.1 + 150201 0.68 0.601646
Target:  5'- gGGGGCGGCaCCGG---GGGugUUGGUg -3'
miRNA:   3'- -UCCCGCCGgGGCUuggUCCugAACUA- -5'
5450 3' -60.3 NC_001798.1 + 27752 0.68 0.601646
Target:  5'- gAGGGCccgcaacacGGCCCgGGcugcgcacgccaGCCGGGACgggUGAg -3'
miRNA:   3'- -UCCCG---------CCGGGgCU------------UGGUCCUGa--ACUa -5'
5450 3' -60.3 NC_001798.1 + 153089 0.68 0.581685
Target:  5'- cGGGGCGGCgCCGGGCCcucgcGGAUa---- -3'
miRNA:   3'- -UCCCGCCGgGGCUUGGu----CCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 150436 0.68 0.561863
Target:  5'- cGGGGCGGaCUCCGGACgcgCGGGGCg---- -3'
miRNA:   3'- -UCCCGCC-GGGGCUUG---GUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 24024 0.69 0.536382
Target:  5'- uGGGGUGGCUCCaGAACCcgcgcguggcgcccgGGGACgUGGc -3'
miRNA:   3'- -UCCCGCCGGGG-CUUGG---------------UCCUGaACUa -5'
5450 3' -60.3 NC_001798.1 + 2627 0.69 0.532497
Target:  5'- -cGGCGGCgCCCuGGCCGGGGCggGGc -3'
miRNA:   3'- ucCCGCCG-GGGcUUGGUCCUGaaCUa -5'
5450 3' -60.3 NC_001798.1 + 66378 0.69 0.532497
Target:  5'- cGGGCGGaCCgCCGcACCAGGGgUuUGAa -3'
miRNA:   3'- uCCCGCC-GG-GGCuUGGUCCUgA-ACUa -5'
5450 3' -60.3 NC_001798.1 + 149668 0.69 0.532497
Target:  5'- cGGGUcgcgGGCCCCGGGCuCGGGGCc---- -3'
miRNA:   3'- uCCCG----CCGGGGCUUG-GUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 59687 0.69 0.531527
Target:  5'- gGGGGCGGCgggcacgCCCGucuUCGGGcGCUUGGUg -3'
miRNA:   3'- -UCCCGCCG-------GGGCuu-GGUCC-UGAACUA- -5'
5450 3' -60.3 NC_001798.1 + 23717 0.69 0.513227
Target:  5'- cGGGCGGCCCCGGcgggucgaGCU-GGACgccGAc -3'
miRNA:   3'- uCCCGCCGGGGCU--------UGGuCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 111605 0.69 0.5037
Target:  5'- cGGGGCGGCCUCcugGAGCCccgGGGGCg---- -3'
miRNA:   3'- -UCCCGCCGGGG---CUUGG---UCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 55111 0.69 0.5037
Target:  5'- cGGGCcacacgcGCCCCGGAcCCGGGACUa--- -3'
miRNA:   3'- uCCCGc------CGGGGCUU-GGUCCUGAacua -5'
5450 3' -60.3 NC_001798.1 + 147011 0.69 0.49425
Target:  5'- cGGGGac-CCCCGGgcggGCCGGGGCUUGGc -3'
miRNA:   3'- -UCCCgccGGGGCU----UGGUCCUGAACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.