miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 3' -60.3 NC_001798.1 + 28861 0.66 0.6917
Target:  5'- gAGGGCGGCCUCG-GCCGGcGGagccccgGAg -3'
miRNA:   3'- -UCCCGCCGGGGCuUGGUC-CUgaa----CUa -5'
5450 3' -60.3 NC_001798.1 + 31993 0.72 0.348611
Target:  5'- gAGGGCggcgccgcgccgGGCCCCGGACUcGGACUcGGg -3'
miRNA:   3'- -UCCCG------------CCGGGGCUUGGuCCUGAaCUa -5'
5450 3' -60.3 NC_001798.1 + 32363 0.84 0.064809
Target:  5'- gAGGGCGGCCCCGAGcCCGGGGCc---- -3'
miRNA:   3'- -UCCCGCCGGGGCUU-GGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 34735 0.66 0.681777
Target:  5'- gAGGGUcgGGCCCgGGAgCGGGGCg---- -3'
miRNA:   3'- -UCCCG--CCGGGgCUUgGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 34798 0.67 0.66182
Target:  5'- cGGcGCGGCCCgGGGCCccGGGGCc---- -3'
miRNA:   3'- uCC-CGCCGGGgCUUGG--UCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 34884 0.67 0.66182
Target:  5'- cGGGCGGCuaCCCGGgacccccgGCCGGGAaucGAa -3'
miRNA:   3'- uCCCGCCG--GGGCU--------UGGUCCUgaaCUa -5'
5450 3' -60.3 NC_001798.1 + 34970 0.71 0.404817
Target:  5'- gGGGGCGGCCgCCGAgguGCgGGGGCc---- -3'
miRNA:   3'- -UCCCGCCGG-GGCU---UGgUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 36316 0.72 0.364089
Target:  5'- gGGGcGCGGgCCgGGGCCGGGGCUcgcUGGUc -3'
miRNA:   3'- -UCC-CGCCgGGgCUUGGUCCUGA---ACUA- -5'
5450 3' -60.3 NC_001798.1 + 37898 0.67 0.66182
Target:  5'- uAGGGCcgcggauGCCCCGAGCCAGcaguUUUGGa -3'
miRNA:   3'- -UCCCGc------CGGGGCUUGGUCcu--GAACUa -5'
5450 3' -60.3 NC_001798.1 + 39398 0.66 0.671814
Target:  5'- gAGGGCGccuuucGCUCCgGGACCGGGGCg---- -3'
miRNA:   3'- -UCCCGC------CGGGG-CUUGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 43524 0.66 0.681777
Target:  5'- aGGcGGCGGCCgCGucucccGCCAGGGCg---- -3'
miRNA:   3'- -UC-CCGCCGGgGCu-----UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 53179 0.66 0.729866
Target:  5'- cGGGCGuCCCCGAgcggcgcaucuucGCCGGGugUc--- -3'
miRNA:   3'- uCCCGCcGGGGCU-------------UGGUCCugAacua -5'
5450 3' -60.3 NC_001798.1 + 54295 0.66 0.721149
Target:  5'- cGGGGCcgcccuGGCCCCGGACCugcuucGGAgcgGAa -3'
miRNA:   3'- -UCCCG------CCGGGGCUUGGu-----CCUgaaCUa -5'
5450 3' -60.3 NC_001798.1 + 55111 0.69 0.5037
Target:  5'- cGGGCcacacgcGCCCCGGAcCCGGGACUa--- -3'
miRNA:   3'- uCCCGc------CGGGGCUU-GGUCCUGAacua -5'
5450 3' -60.3 NC_001798.1 + 56003 0.66 0.701576
Target:  5'- aGGGGCugguaggcgGGUCCCGAagcacggaaaGCCAuagcaccaccgcGGGCUUGAa -3'
miRNA:   3'- -UCCCG---------CCGGGGCU----------UGGU------------CCUGAACUa -5'
5450 3' -60.3 NC_001798.1 + 58854 0.77 0.17655
Target:  5'- -aGGCGGCCCCGAgcGCCAGGcACUgGGUc -3'
miRNA:   3'- ucCCGCCGGGGCU--UGGUCC-UGAaCUA- -5'
5450 3' -60.3 NC_001798.1 + 59109 0.67 0.631733
Target:  5'- cGuGGCGGCCUgGAGCCAGaGAUgcgcGAa -3'
miRNA:   3'- uC-CCGCCGGGgCUUGGUC-CUGaa--CUa -5'
5450 3' -60.3 NC_001798.1 + 59687 0.69 0.531527
Target:  5'- gGGGGCGGCgggcacgCCCGucuUCGGGcGCUUGGUg -3'
miRNA:   3'- -UCCCGCCG-------GGGCuu-GGUCC-UGAACUA- -5'
5450 3' -60.3 NC_001798.1 + 59791 0.66 0.701576
Target:  5'- cGGGCGGUaCCCGGGCCuGGccCUcGAg -3'
miRNA:   3'- uCCCGCCG-GGGCUUGGuCCu-GAaCUa -5'
5450 3' -60.3 NC_001798.1 + 60882 0.66 0.721149
Target:  5'- gGGGGCGGCggCCGcaccGCCGGGAagaUGAg -3'
miRNA:   3'- -UCCCGCCGg-GGCu---UGGUCCUga-ACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.