miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 3' -60.3 NC_001798.1 + 2564 0.67 0.621694
Target:  5'- aGGGGCGGCCgCGGGgCGGGGg----- -3'
miRNA:   3'- -UCCCGCCGGgGCUUgGUCCUgaacua -5'
5450 3' -60.3 NC_001798.1 + 2627 0.69 0.532497
Target:  5'- -cGGCGGCgCCCuGGCCGGGGCggGGc -3'
miRNA:   3'- ucCCGCCG-GGGcUUGGUCCUGaaCUa -5'
5450 3' -60.3 NC_001798.1 + 2816 0.67 0.641772
Target:  5'- cGGGCccagGGCCCCGGcgACCAGG-CUc--- -3'
miRNA:   3'- uCCCG----CCGGGGCU--UGGUCCuGAacua -5'
5450 3' -60.3 NC_001798.1 + 2984 0.66 0.73083
Target:  5'- cGGGGCggccggcccgcgGGCCCCGGgcGCgGGGGCg---- -3'
miRNA:   3'- -UCCCG------------CCGGGGCU--UGgUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 3790 0.67 0.631733
Target:  5'- cGGGGCgcccgaGGCCUCGAACCGGGcccGCg---- -3'
miRNA:   3'- -UCCCG------CCGGGGCUUGGUCC---UGaacua -5'
5450 3' -60.3 NC_001798.1 + 3900 0.76 0.219904
Target:  5'- gGGGGcCGGCCCCGGGCCAcGGCUccccgcUGAc -3'
miRNA:   3'- -UCCC-GCCGGGGCUUGGUcCUGA------ACUa -5'
5450 3' -60.3 NC_001798.1 + 4118 0.67 0.631733
Target:  5'- uGGGCGGgCUCG-GCCGGGGCg---- -3'
miRNA:   3'- uCCCGCCgGGGCuUGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 5617 0.67 0.651803
Target:  5'- cGGGCGGCUCCGccCCaaagGGGGCggGGc -3'
miRNA:   3'- uCCCGCCGGGGCuuGG----UCCUGaaCUa -5'
5450 3' -60.3 NC_001798.1 + 13081 0.66 0.6917
Target:  5'- gAGGcGCGGgCCCGGugcuCCAGGAUa---- -3'
miRNA:   3'- -UCC-CGCCgGGGCUu---GGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 16173 0.71 0.430592
Target:  5'- cGGGCGGCCCgCGGggACCGGGGg--GAc -3'
miRNA:   3'- uCCCGCCGGG-GCU--UGGUCCUgaaCUa -5'
5450 3' -60.3 NC_001798.1 + 22388 0.73 0.305041
Target:  5'- gGGGGCGGaaCCCCGGcgaGCCGGGGCg---- -3'
miRNA:   3'- -UCCCGCC--GGGGCU---UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 22809 0.67 0.631733
Target:  5'- -cGGCGGCCCCGGAUCuccGGAUc---- -3'
miRNA:   3'- ucCCGCCGGGGCUUGGu--CCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 22961 0.67 0.621694
Target:  5'- cGaGGCGGCCCCGGcguCCGGGGa----- -3'
miRNA:   3'- uC-CCGCCGGGGCUu--GGUCCUgaacua -5'
5450 3' -60.3 NC_001798.1 + 23717 0.69 0.513227
Target:  5'- cGGGCGGCCCCGGcgggucgaGCU-GGACgccGAc -3'
miRNA:   3'- uCCCGCCGGGGCU--------UGGuCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 23813 0.66 0.681777
Target:  5'- cGGGGcCGGCCCCccgcccCCGGGGCg---- -3'
miRNA:   3'- -UCCC-GCCGGGGcuu---GGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 24024 0.69 0.536382
Target:  5'- uGGGGUGGCUCCaGAACCcgcgcguggcgcccgGGGACgUGGc -3'
miRNA:   3'- -UCCCGCCGGGG-CUUGG---------------UCCUGaACUa -5'
5450 3' -60.3 NC_001798.1 + 27202 0.7 0.483949
Target:  5'- aGGGGCGGgggaagcCCCCGGGgCGGGGCgcgGGg -3'
miRNA:   3'- -UCCCGCC-------GGGGCUUgGUCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 27559 0.66 0.711395
Target:  5'- aGGGGCGGCgCCCGcgggggagcGGCCggcuccgggggaGGGACgggGAa -3'
miRNA:   3'- -UCCCGCCG-GGGC---------UUGG------------UCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 27752 0.68 0.601646
Target:  5'- gAGGGCccgcaacacGGCCCgGGcugcgcacgccaGCCGGGACgggUGAg -3'
miRNA:   3'- -UCCCG---------CCGGGgCU------------UGGUCCUGa--ACUa -5'
5450 3' -60.3 NC_001798.1 + 28173 0.67 0.631733
Target:  5'- uGGGCGaacagccCCCCGAGCgAGGGCggGGg -3'
miRNA:   3'- uCCCGCc------GGGGCUUGgUCCUGaaCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.