miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 3' -60.3 NC_001798.1 + 32363 0.84 0.064809
Target:  5'- gAGGGCGGCCCCGAGcCCGGGGCc---- -3'
miRNA:   3'- -UCCCGCCGGGGCUU-GGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 152551 0.77 0.17655
Target:  5'- cGGGGCGGCCCCGuccccggggaccAACCGGGugUa--- -3'
miRNA:   3'- -UCCCGCCGGGGC------------UUGGUCCugAacua -5'
5450 3' -60.3 NC_001798.1 + 58854 0.77 0.17655
Target:  5'- -aGGCGGCCCCGAgcGCCAGGcACUgGGUc -3'
miRNA:   3'- ucCCGCCGGGGCU--UGGUCC-UGAaCUA- -5'
5450 3' -60.3 NC_001798.1 + 97578 0.76 0.204525
Target:  5'- gGGGagcGCGGCCCCGAGCCAGGGg----- -3'
miRNA:   3'- -UCC---CGCCGGGGCUUGGUCCUgaacua -5'
5450 3' -60.3 NC_001798.1 + 3900 0.76 0.219904
Target:  5'- gGGGGcCGGCCCCGGGCCAcGGCUccccgcUGAc -3'
miRNA:   3'- -UCCC-GCCGGGGCUUGGUcCUGA------ACUa -5'
5450 3' -60.3 NC_001798.1 + 22388 0.73 0.305041
Target:  5'- gGGGGCGGaaCCCCGGcgaGCCGGGGCg---- -3'
miRNA:   3'- -UCCCGCC--GGGGCU---UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 122132 0.73 0.312003
Target:  5'- cGGGGgGGcCCCCGGGCCGcGGGCgagGAc -3'
miRNA:   3'- -UCCCgCC-GGGGCUUGGU-CCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 31993 0.72 0.348611
Target:  5'- gAGGGCggcgccgcgccgGGCCCCGGACUcGGACUcGGg -3'
miRNA:   3'- -UCCCG------------CCGGGGCUUGGuCCUGAaCUa -5'
5450 3' -60.3 NC_001798.1 + 36316 0.72 0.364089
Target:  5'- gGGGcGCGGgCCgGGGCCGGGGCUcgcUGGUc -3'
miRNA:   3'- -UCC-CGCCgGGgCUUGGUCCUGA---ACUA- -5'
5450 3' -60.3 NC_001798.1 + 34970 0.71 0.404817
Target:  5'- gGGGGCGGCCgCCGAgguGCgGGGGCc---- -3'
miRNA:   3'- -UCCCGCCGG-GGCU---UGgUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 127338 0.71 0.413301
Target:  5'- --cGUGGCCCCGAGCCuGGGCguccccgUGAc -3'
miRNA:   3'- uccCGCCGGGGCUUGGuCCUGa------ACUa -5'
5450 3' -60.3 NC_001798.1 + 16173 0.71 0.430592
Target:  5'- cGGGCGGCCCgCGGggACCGGGGg--GAc -3'
miRNA:   3'- uCCCGCCGGG-GCU--UGGUCCUgaaCUa -5'
5450 3' -60.3 NC_001798.1 + 96352 0.7 0.466406
Target:  5'- -cGGCGGCaCCUGcGGCCGGGGCUgGAg -3'
miRNA:   3'- ucCCGCCG-GGGC-UUGGUCCUGAaCUa -5'
5450 3' -60.3 NC_001798.1 + 27202 0.7 0.483949
Target:  5'- aGGGGCGGgggaagcCCCCGGGgCGGGGCgcgGGg -3'
miRNA:   3'- -UCCCGCC-------GGGGCUUgGUCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 147011 0.69 0.49425
Target:  5'- cGGGGac-CCCCGGgcggGCCGGGGCUUGGc -3'
miRNA:   3'- -UCCCgccGGGGCU----UGGUCCUGAACUa -5'
5450 3' -60.3 NC_001798.1 + 55111 0.69 0.5037
Target:  5'- cGGGCcacacgcGCCCCGGAcCCGGGACUa--- -3'
miRNA:   3'- uCCCGc------CGGGGCUU-GGUCCUGAacua -5'
5450 3' -60.3 NC_001798.1 + 111605 0.69 0.5037
Target:  5'- cGGGGCGGCCUCcugGAGCCccgGGGGCg---- -3'
miRNA:   3'- -UCCCGCCGGGG---CUUGG---UCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 23717 0.69 0.513227
Target:  5'- cGGGCGGCCCCGGcgggucgaGCU-GGACgccGAc -3'
miRNA:   3'- uCCCGCCGGGGCU--------UGGuCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 59687 0.69 0.531527
Target:  5'- gGGGGCGGCgggcacgCCCGucuUCGGGcGCUUGGUg -3'
miRNA:   3'- -UCCCGCCG-------GGGCuu-GGUCC-UGAACUA- -5'
5450 3' -60.3 NC_001798.1 + 2627 0.69 0.532497
Target:  5'- -cGGCGGCgCCCuGGCCGGGGCggGGc -3'
miRNA:   3'- ucCCGCCG-GGGcUUGGUCCUGaaCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.